SMTL ID : 3u67.2 (1 other biounit)

Crystal structure of the N-terminal domain of Hsp90 from Leishmania major(LmjF33.0312)in complex with ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: N.54, A.58, D.96, M.101, N.109, L.110, R.115, G.138, V.139, G.140, F.141, T.187 Ligands: MG.2 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:N.54, A:D.57, A:D.96, A:N.109, A:G.138, A:F.141 Water bridges: A:N.54, A:A.58, A:A.58, A:D.96, A:R.115, A:G.140, A:G.140, A:T.187, A:T.187 ADP.6: 13 residues within 4Å: Chain B: N.54, A.58, D.96, M.101, N.109, L.110, R.115, G.138, V.139, G.140, F.141, T.187 Ligands: MG.7 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:N.54, B:D.57, B:D.96, B:N.109, B:G.138, B:F.141 Water bridges: B:N.54, B:A.58, B:A.58, B:D.96, B:R.115, B:G.140, B:G.140, B:T.187, B:T.187

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: N.54 Ligands: ADP.1 No protein-ligand interaction detected (PLIP) MG.7: 2 residues within 4Å: Chain B: N.54 Ligands: ADP.6 No protein-ligand interaction detected (PLIP)

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: T.154, S.162, V.164, T.176, S.177, T.178, S.181 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.176 Water bridges: A:M.183, A:M.183 EDO.4: 4 residues within 4Å: Chain A: R.63, P.77, L.79, Y.219 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.79 EDO.5: 4 residues within 4Å: Chain A: S.71, V.72, G.74, N.158 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.72, A:N.158 EDO.8: 7 residues within 4Å: Chain B: T.154, S.162, V.164, T.176, S.177, T.178, S.181 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.176 Water bridges: B:M.183, B:M.183 EDO.9: 4 residues within 4Å: Chain B: R.63, P.77, L.79, Y.219 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.79 EDO.10: 4 residues within 4Å: Chain B: S.71, V.72, G.74, N.158 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.72, B:N.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pizarro, J.C. et al., Exploring the Trypanosoma brucei Hsp83 potential as a target for structure guided drug design. PLoS Negl Trop Dis (2013)

Release Date

2012-05-30

Peptides

Heat shock protein 83-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Heat shock protein 83-1

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