SMTL ID : 3hha.1 (3 other biounits)

Crystal structure of cathepsin L in complex with AZ12878478

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.27 Å

Oligo State

monomer

Ligands

1 x NOW: Nalpha-[(3-tert-butyl-1-methyl-1H-pyrazol-5-yl)carbonyl]-N-[(2Z)-2-iminoethyl]-3-methyl-L-phenylalaninamide(Covalent)

NOW.1: 19 residues within 4Å: Chain A: Q.19, G.23, S.24, C.25, W.26, G.61, E.63, G.67, G.68, L.69, M.70, Y.72, A.135, M.161, D.162, G.164, A.214 Ligands: PG4.2, ACT.3 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.69, A:L.69, A:Y.72, A:A.135, A:A.214 Hydrogen bonds: A:Q.19, A:C.25, A:G.68, A:G.68, A:D.162

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 9 residues within 4Å: Chain A: Q.19, G.20, Q.21, C.22, G.23, L.144, W.189 Ligands: NOW.1, ACT.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.19, A:Q.21

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 4 residues within 4Å: Chain A: N.66, D.162 Ligands: NOW.1, PG4.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Asaad, N. et al., Dipeptidyl nitrile inhibitors of Cathepsin L. Bioorg.Med.Chem.Lett. (2009)

Release Date

2009-06-23

Peptides

Cathepsin L1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cathepsin L1

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