SMTL ID : 8c77.3 (3 other biounits)

Human cathepsin L after reaction with the thiocarbazate inhibitor CID 16725315

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x TXH: ~{tert}-butyl ~{N}-[(2~{S})-3-(1~{H}-indol-3-yl)-1-(2-methanoylhydrazinyl)-1-oxidanylidene-propan-2-yl]carbamate(Covalent)

TXH.1: 17 residues within 4Å: Chain A: Q.19, G.23, S.24, C.25, W.26, E.63, N.66, G.67, G.68, L.69, M.70, A.135, M.161, D.162, H.163, A.214 Ligands: PG4.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.69, A:A.135, A:A.135, A:A.214 Hydrogen bonds: A:Q.19, A:C.25, A:G.68, A:G.68, A:M.161, A:D.162 Water bridges: A:G.23, A:H.163

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 6 residues within 4Å: Chain A: Q.19, G.20, A.138, D.162, W.189 Ligands: TXH.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.19, A:A.138 Water bridges: A:H.163

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 7 residues within 4Å: Chain A: D.84, S.88, Y.89, P.90, K.99, N.101, Y.104 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.101

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: C.56, P.59, Q.60, Y.76 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:C.56, A:Q.60 Water bridges: A:Y.76 EDO.5: 4 residues within 4Å: Chain A: N.18, Q.19, G.20, Y.91 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Falke, S. et al., Human cathepsin L after reaction with the thiocarbazate inhibitor CID 16725315. To Be Published

Release Date

2023-01-25

Peptides

Cathepsin L: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Cathepsin L

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