SMTL ID : 3hjb.1 (1 other biounit)

1.5 Angstrom Crystal Structure of Glucose-6-phosphate Isomerase from Vibrio cholerae.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 1 residues within 4Å: Chain A: E.86 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.86, H2O.8, H2O.20, H2O.22, H2O.34 CA.2: 1 residues within 4Å: Chain A: E.192 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.192, H2O.14, H2O.27, H2O.29, H2O.39 CA.3: 1 residues within 4Å: Chain A: E.277 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.277, H2O.33, H2O.38, H2O.39, H2O.41 CA.4: 4 residues within 4Å: Chain A: E.356 Chain B: G.354, E.356 Ligands: CA.14 4 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: A:E.356, B:G.354, H2O.79, H2O.79 CA.13: 1 residues within 4Å: Chain B: E.86 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.86, B:E.86, H2O.44, H2O.44, H2O.51 CA.14: 3 residues within 4Å: Chain A: G.354 Chain B: E.356 Ligands: CA.4 5 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: B:E.356, A:G.354, H2O.39, H2O.39, H2O.79

14 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain A: R.119, A.120, W.291 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: N.351, Y.395, Q.396 Ligand excluded by PLIP CL.7: 5 residues within 4Å: Chain A: V.148, K.151, M.285, F.286, E.287 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain A: Q.443 Chain B: F.569, R.573 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain A: N.199, G.311 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain A: M.50, D.51, A.54 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain A: S.475, A.476 Ligand excluded by PLIP CL.15: 3 residues within 4Å: Chain B: R.119, A.120, W.291 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain B: N.199, I.310, G.311 Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain B: N.351, Y.395, Q.396 Ligand excluded by PLIP CL.18: 2 residues within 4Å: Chain B: W.289, D.290 Ligand excluded by PLIP CL.19: 5 residues within 4Å: Chain B: N.128, R.129, N.131, M.142, N.146 Ligand excluded by PLIP CL.20: 6 residues within 4Å: Chain B: A.95, K.96, D.99, L.100, Q.101, F.334 Ligand excluded by PLIP CL.21: 3 residues within 4Å: Chain A: F.56 Chain B: D.559, S.560 Ligand excluded by PLIP

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.12: 9 residues within 4Å: Chain A: Q.48, L.82, G.420, T.421, K.422, L.423, N.491, R.492 Ligands: PEG.23 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.48, A:R.492 Water bridges: A:G.420, A:E.489, A:N.491, A:R.492, A:R.492

1 x NA: SODIUM ION(Non-functional Binders)

NA.22: 0 residues within 4Å: (No contacts) 2 PLIP interactions: 2 interactions with chain B Water bridges: B:R.119, B:R.119

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.23: 5 residues within 4Å: Chain A: T.421 Chain B: V.393, Y.395, Q.396 Ligands: PG4.12 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.396

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., 1.5 Angstrom Crystal Structure of Glucose-6-phosphate Isomerase from Vibrio cholerae. To be Published

Release Date

2009-06-16

Peptides

Glucose-6-phosphate isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glucose-6-phosphate isomerase

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