SMTL ID : 3hjb.2 (1 other biounit)

1.5 Angstrom Crystal Structure of Glucose-6-phosphate Isomerase from Vibrio cholerae.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 1 residues within 4Å: Chain A: E.86 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.86, A:E.86, H2O.3, H2O.7, H2O.12 CA.11: 1 residues within 4Å: Chain B: E.86 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.86, H2O.47, H2O.47, H2O.58, H2O.61 CA.12: 1 residues within 4Å: Chain B: E.192 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.192, H2O.53, H2O.66, H2O.76, H2O.76 CA.13: 1 residues within 4Å: Chain B: E.277 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.277, H2O.66, H2O.76, H2O.76, H2O.77

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: R.119, A.120, W.291 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: N.199, I.310, G.311 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: F.569, R.573 Chain B: Q.443 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: N.351, Y.395, Q.396 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain A: S.434, N.436, H.441, H.442 Chain B: G.211 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain B: R.119, A.120, W.291 Ligand excluded by PLIP CL.15: 3 residues within 4Å: Chain B: N.351, Y.395, Q.396 Ligand excluded by PLIP CL.16: 2 residues within 4Å: Chain B: N.199, G.311 Ligand excluded by PLIP CL.17: 5 residues within 4Å: Chain B: V.148, K.151, M.285, F.286, E.287 Ligand excluded by PLIP CL.18: 3 residues within 4Å: Chain B: M.50, D.51, A.54 Ligand excluded by PLIP CL.19: 3 residues within 4Å: Chain B: I.113, F.528, F.530 Ligand excluded by PLIP CL.20: 2 residues within 4Å: Chain B: S.475, A.476 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.7: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.117

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.8: 2 residues within 4Å: Chain A: A.472, K.474 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.474 Water bridges: A:K.474, A:K.474 PEG.9: 3 residues within 4Å: Chain A: R.129, S.130, N.131 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.131 PEG.10: 6 residues within 4Å: Chain A: V.393, T.394, Y.395, Q.396 Chain B: T.421 Ligands: PG4.21 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.396 Water bridges: A:V.393

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.21: 9 residues within 4Å: Chain B: Q.48, L.82, G.420, T.421, K.422, L.423, N.491, R.492 Ligands: PEG.10 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.48, B:R.492 Water bridges: B:H.353, B:G.420, B:R.492, B:R.492, A:Q.396

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., 1.5 Angstrom Crystal Structure of Glucose-6-phosphate Isomerase from Vibrio cholerae. To be Published

Release Date

2009-06-16

Peptides

Glucose-6-phosphate isomerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Glucose-6-phosphate isomerase

Related Entries With Identical Sequence