SMTL ID : 3hkr.1

Crystal Structure of Glutathione Transferase Pi Y108V Mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

5 x CA: CALCIUM ION(Non-covalent)

CA.1: 2 residues within 4Å: Chain A: G.77, Q.147 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:G.77, H2O.1, H2O.3, H2O.6, H2O.6 CA.3: 2 residues within 4Å: Chain A: D.98 Chain B: Q.64 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.98, A:D.98, H2O.14 CA.5: 1 residues within 4Å: Chain A: D.171 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.171, H2O.5 CA.6: 2 residues within 4Å: Chain B: G.77, Q.147 5 PLIP interactions: 5 Ligand-Water interactions Metal complexes: H2O.11, H2O.13, H2O.15, H2O.16, H2O.16 CA.9: 3 residues within 4Å: Chain A: Q.64 Chain B: D.98 Ligands: CO3.4 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.98, B:D.98, H2O.10, H2O.10, H2O.19

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 5 residues within 4Å: Chain A: A.22, W.28, E.30, F.192, E.197 6 PLIP interactions: 6 interactions with chain A Water bridges: A:W.28, A:W.28, A:E.30, A:F.192, A:E.197 Salt bridges: A:E.197 MES.7: 4 residues within 4Å: Chain B: A.22, W.28, E.30, E.197 4 PLIP interactions: 4 interactions with chain B Water bridges: B:W.28, B:E.30, B:F.192 Salt bridges: B:E.197

3 x CO3: CARBONATE ION(Non-functional Binders)

CO3.4: 6 residues within 4Å: Chain A: R.13, Q.51, P.53, Q.64, S.65 Ligands: CA.9 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.52, A:Q.64, A:S.65, A:S.65 CO3.8: 4 residues within 4Å: Chain B: F.142, Q.147, I.148, R.186 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.186, B:R.186 Water bridges: B:Q.24, B:Q.147, B:I.148 CO3.10: 5 residues within 4Å: Chain B: R.13, Q.51, P.53, Q.64, S.65 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.52, B:Q.64, B:S.65, B:S.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Quesada-Soriano, I. et al., Influence of the H-site residue 108 on human glutathione transferase P1-1 ligand binding: structure-thermodynamic relationships and thermal stability. Protein Sci. (2009)

Release Date

2009-09-22

Peptides

Glutathione S-transferase P: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutathione S-transferase P

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