- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x ACD: ARACHIDONIC ACID(Non-covalent)
ACD.5: 16 residues within 4Å:- Chain A: V.89, F.178, Y.321, V.322, S.326, Y.328, F.354, Y.358, W.360, F.491, V.496, G.499, A.500, S.503, L.504, L.507
13 PLIP interactions:13 interactions with chain A- Hydrophobic interactions: A:V.89, A:Y.321, A:V.322, A:Y.328, A:W.360, A:F.491, A:F.491, A:V.496, A:V.496, A:A.500, A:L.504
- Hydrogen bonds: A:Y.358, A:Y.358
ACD.15: 21 residues within 4Å:- Chain B: F.178, F.182, V.201, V.317, Y.321, V.322, L.325, S.326, Y.328, I.350, F.354, Y.358, W.360, M.495, V.496, G.499, A.500, S.503, L.504, G.506, L.507
19 PLIP interactions:19 interactions with chain B- Hydrophobic interactions: B:F.178, B:F.178, B:F.182, B:F.182, B:F.182, B:V.201, B:V.317, B:Y.321, B:V.322, B:L.325, B:I.350, B:F.354, B:F.354, B:W.360, B:V.496, B:A.500, B:L.507, B:L.507
- Salt bridges: B:R.93
- 2 x AKR: ACRYLIC ACID(Non-covalent)
AKR.6: 5 residues within 4Å:- Chain A: S.450, F.451, E.452, A.461, K.465
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:F.451, A:K.465
- Hydrogen bonds: A:F.451, A:E.452
AKR.7: 6 residues within 4Å:- Chain A: D.212, R.213, K.216, Q.243, V.244, E.245
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:R.213
- Hydrogen bonds: A:E.245
- Water bridges: A:D.212
- Salt bridges: A:R.213, A:K.216
- 2 x COH: PROTOPORPHYRIN IX CONTAINING CO(Non-covalent)
COH.8: 18 residues within 4Å:- Chain A: Y.121, A.172, F.173, A.175, Q.176, H.180, F.183, K.184, T.185, H.187, V.268, N.355, Y.358, H.359, W.360, H.361, L.364, V.420
18 PLIP interactions:18 interactions with chain A,- Hydrophobic interactions: A:F.173, A:A.175, A:Q.176, A:F.183, A:F.183, A:V.268, A:Y.358, A:W.360, A:L.364
- Hydrogen bonds: A:T.185, A:T.185, A:N.355
- Water bridges: A:H.180, A:F.183
- Salt bridges: A:H.187
- pi-Stacking: A:H.180, A:H.359
- Metal complexes: A:H.361
COH.16: 20 residues within 4Å:- Chain B: Y.121, A.172, F.173, A.175, Q.176, H.180, F.183, K.184, T.185, V.268, N.355, Y.358, H.359, W.360, H.361, L.364, L.381, V.420, A.423, Q.427
19 PLIP interactions:19 interactions with chain B,- Hydrophobic interactions: B:F.173, B:A.175, B:F.183, B:F.183, B:V.268, B:Y.358, B:W.360, B:L.364, B:L.364, B:L.381, B:V.420, B:V.420
- Hydrogen bonds: B:Y.121, B:T.185, B:N.355, B:Q.427
- Water bridges: B:F.183
- pi-Stacking: B:H.180
- Metal complexes: B:H.361
- 2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.9: 5 residues within 4Å:- Chain A: Q.379, N.383, S.385, I.386, E.389
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.383, A:E.389
- Water bridges: A:N.383
NAG.17: 6 residues within 4Å:- Chain B: K.378, Q.379, N.383, S.385, I.386, E.389
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.383, B:E.389, B:E.389
- 2 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
BOG.10: 9 residues within 4Å:- Chain A: E.152, K.153, L.156, R.157, R.158, R.411, I.415, E.459, E.463
16 PLIP interactions:16 interactions with chain A- Hydrophobic interactions: A:E.152, A:L.156, A:L.156, A:R.158, A:I.415
- Hydrogen bonds: A:K.153, A:K.153, A:R.158, A:R.411, A:E.459, A:E.463, A:E.463
- Water bridges: A:R.411, A:E.463
- Salt bridges: A:R.158, A:R.411
BOG.18: 5 residues within 4Å:- Chain B: E.152, R.157, R.158, I.415, Q.418
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:I.415
- Hydrogen bonds: B:Q.418
- Water bridges: B:E.152
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.11: 8 residues within 4Å:- Chain A: H.62, Q.165, L.325, R.486, A.489, I.490, F.491, V.496
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.486, A:I.490, A:F.491
EDO.12: 7 residues within 4Å:- Chain A: P.135, M.136, L.144, S.428, R.429, K.432, Y.433
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.432
EDO.13: 5 residues within 4Å:- Chain A: C.29, D.30, C.31
- Chain B: P.520, E.526
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:E.526, A:D.30, A:C.31
EDO.14: 8 residues within 4Å:- Chain A: E.281, R.284, E.312, A.535, S.539, L.540, N.543, N.544
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.284, A:N.543, A:N.544
- Water bridges: A:T.534
EDO.19: 8 residues within 4Å:- Chain B: H.62, Q.165, L.325, R.486, A.489, I.490, F.491, V.496
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:L.325, B:R.486, B:I.490, B:F.491
- Water bridges: B:H.62
EDO.20: 4 residues within 4Å:- Chain B: K.224, Y.227, V.234, N.283
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.224, B:K.224, B:N.283
EDO.21: 6 residues within 4Å:- Chain B: P.135, L.144, S.428, R.429, K.432, Y.433
1 PLIP interactions:1 interactions with chain B- Water bridges: B:E.475
EDO.22: 7 residues within 4Å:- Chain A: P.520, S.521, G.525, E.526
- Chain B: M.20, K.28, D.30
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.526
- Water bridges: A:E.526
EDO.23: 8 residues within 4Å:- Chain B: E.281, R.284, E.312, A.535, S.539, L.540, N.543, N.544
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:R.284, B:S.539, B:S.539, B:N.543, B:N.544
- Water bridges: B:T.534, B:T.534, B:S.539
EDO.24: 4 residues within 4Å:- Chain A: L.118, L.197
- Chain B: S.116, L.118
No protein-ligand interaction detected (PLIP)EDO.25: 4 residues within 4Å:- Chain B: R.218, F.220, D.298, E.299
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:R.218, B:D.298, B:D.298, B:E.299
- Water bridges: B:G.297, B:E.299, B:Q.300
EDO.26: 5 residues within 4Å:- Chain B: R.213, K.216, Q.243, V.244, E.245
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.213, B:K.216, B:E.245
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vecchio, A.J. et al., Structural basis of fatty acid substrate binding to cyclooxygenase-2. J.Biol.Chem. (2010)
- Release Date
- 2010-05-12
- Peptides
- Prostaglandin G/H synthase 2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x NAG- NAG- MAN: alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x ACD: ARACHIDONIC ACID(Non-covalent)
- 2 x AKR: ACRYLIC ACID(Non-covalent)
- 2 x COH: PROTOPORPHYRIN IX CONTAINING CO(Non-covalent)
- 2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 2 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
- 12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Vecchio, A.J. et al., Structural basis of fatty acid substrate binding to cyclooxygenase-2. J.Biol.Chem. (2010)
- Release Date
- 2010-05-12
- Peptides
- Prostaglandin G/H synthase 2: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B