SMTL ID : 3htf.1

4-chloro-1h-pyrazole in complex with T4 lysozyme L99A/M102Q

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: R.125, W.126, D.127, E.128 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:W.126, A:D.127, A:E.128, A:E.128, A:E.128, A:E.128 Water bridges: A:D.127

2 x JZ6: 4-chloro-1H-pyrazole(Non-covalent)

JZ6.2: 8 residues within 4Å: Chain A: Q.102, V.103, G.107, G.110, V.111, F.114, L.118 Ligands: JZ6.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.107 Water bridges: A:G.110 JZ6.3: 9 residues within 4Å: Chain A: L.84, V.87, Y.88, A.99, Q.102, V.103, L.118, F.153 Ligands: JZ6.2 1 PLIP interactions: 1 interactions with chain A Halogen bonds: A:L.84

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.4: 1 residues within 4Å: Chain A: D.72 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boyce, S.E. et al., Predicting ligand binding affinity with alchemical free energy methods in a polar model binding site. J.Mol.Biol. (2009)

Release Date

2009-11-03

Peptides

Lysozyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysozyme

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