SMTL ID : 3hw1.3 (2 other biounits)

Structure of Bace (beta secretase) in complex with ligand EV2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.48 Å

Oligo State

monomer

Ligands

1 x EV2: 3-pyrrolidin-1-ylquinoxalin-2-amine(Non-covalent)

EV2.1: 7 residues within 4Å: Chain A: D.51, G.53, Y.90, F.127, I.137, D.247, T.250 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.90, A:F.127, A:I.137 Hydrogen bonds: A:D.51 pi-Stacking: A:Y.90

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: K.28, S.29, G.30, Q.31, G.32, Y.33, V.189, T.251, E.358 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.28, A:G.30, A:Q.31, A:G.32, A:T.251, A:E.358

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Godemann, R. et al., Fragment-Based Discovery of BACE1 Inhibitors Using Functional Assays. Biochemistry (2009)

Release Date

2009-11-03

Peptides

Beta-secretase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Beta-secretase 1

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