SMTL ID : 3msj.3 (2 other biounits)

Structure of bace (beta secretase) in complex with inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x EV3: 3-(2-amino-5-chloro-1H-benzimidazol-1-yl)propan-1-ol(Non-covalent)

EV3.1: 11 residues within 4Å: Chain A: D.51, G.53, S.54, Y.90, W.95, F.127, I.137, I.245, D.247, T.250, V.351 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.137 Hydrogen bonds: A:G.53, A:D.247 Salt bridges: A:D.51, A:D.247 pi-Stacking: A:Y.90

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: T.250, T.251, N.252 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.251, A:T.251, A:N.252 Water bridges: A:G.249, A:R.326 GOL.3: 3 residues within 4Å: Chain A: S.206, L.207, W.208 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.206, A:S.206, A:L.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Madden, J. et al., Fragment-based discovery and optimization of BACE1 inhibitors. Bioorg.Med.Chem.Lett. (2010)

Release Date

2010-07-14

Peptides

BETA-SECRETASE 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

BETA-SECRETASE 1

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