SMTL ID : 3hxb.1

Engineered RabGGTase in complex with a peptidomimetic inhibitor (compound 6)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

hetero-1-1-mer

Ligands

1 x BD5: N-[(benzyloxy)carbonyl]-D-tyrosyl-L-phenylalanyl-L-tyrosine(Non-covalent)

BD5.1: 16 residues within 4Å: Chain A: Y.108 Chain B: S.48, W.52, L.96, L.99, S.100, R.144, F.147, H.190, G.192, Q.193, Y.195, C.196, Y.241, W.244, F.289 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:W.52, B:L.96, B:L.99, B:R.144, B:F.147, B:Y.195, B:W.244 Hydrogen bonds: B:S.48, B:L.96, B:S.100, B:R.144, B:Y.241

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: D.238, C.240, D.280, H.290 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.290

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K.T. et al., Design, synthesis, and characterization of Peptide-based rab geranylgeranyl transferase inhibitors. J.Med.Chem. (2009)

Release Date

2009-09-08

Peptides

Geranylgeranyl transferase type-2 subunit alpha: A
Geranylgeranyl transferase type-2 subunit beta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Geranylgeranyl transferase type-2 subunit alpha

Geranylgeranyl transferase type-2 subunit beta

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