SMTL ID : 3hxc.1

Engineered RabGGTase in complex with a peptidomimetic inhibitor (compound 8)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain B: D.238, C.240, H.290 Ligands: BD6.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.238, B:D.238, B:C.240, B:H.290

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain B: H.64, M.66 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.64, B:M.66, H2O.14

1 x BD6: N-[(benzyloxy)carbonyl]-L-histidyl-N-methyl-L-phenylalanyl-N-hydroxy-L-tryptophanamide(Non-covalent)

BD6.3: 19 residues within 4Å: Chain A: Y.108 Chain B: S.48, W.52, L.96, L.99, R.144, F.147, C.148, H.190, G.192, Q.193, C.196, D.238, C.240, Y.241, W.244, F.289, H.290 Ligands: ZN.1 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:W.52, B:L.99, B:R.144, B:F.147, B:F.289 Hydrogen bonds: B:W.52 Water bridges: B:S.48, B:S.48 pi-Stacking: B:W.244, B:F.289 pi-Cation interactions: B:R.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K.T. et al., Design, synthesis, and characterization of Peptide-based rab geranylgeranyl transferase inhibitors. J.Med.Chem. (2009)

Release Date

2009-09-08

Peptides

Geranylgeranyl transferase type-2 subunit alpha: A
Geranylgeranyl transferase type-2 subunit beta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Geranylgeranyl transferase type-2 subunit alpha

Geranylgeranyl transferase type-2 subunit beta

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