SMTL ID : 3hxe.1

Engineered RabGGTase in complex with a peptidomimetic inhibitor (compound 37)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain B: D.238, C.240, F.289, H.290 Ligands: BD8.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.238, B:D.238, B:C.240, B:H.290

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain B: H.64, M.66 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:H.64, B:M.66, H2O.13, H2O.13, H2O.13

1 x BD8: N-undecanoyl-L-histidyl-L-phenylalanyl-N-methyl-N-(2-pyridin-2-ylethyl)-L-tyrosinamide(Non-covalent)

BD8.3: 26 residues within 4Å: Chain A: Y.108 Chain B: Y.30, L.45, R.46, S.48, G.49, Y.51, W.52, L.96, Y.97, R.144, F.147, C.148, G.192, Q.193, Y.195, C.196, D.238, C.240, W.244, P.288, F.289, H.290, F.293, C.314 Ligands: ZN.1 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:Y.30, B:W.52, B:L.96, B:R.144, B:F.147, B:Y.195, B:P.288, B:F.289, B:F.289 Hydrogen bonds: B:Y.97, B:R.144 pi-Stacking: B:W.244

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K.T. et al., Design, synthesis, and characterization of Peptide-based rab geranylgeranyl transferase inhibitors. J.Med.Chem. (2009)

Release Date

2009-09-08

Peptides

Geranylgeranyl transferase type-2 subunit alpha: A
Geranylgeranyl transferase type-2 subunit beta: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Geranylgeranyl transferase type-2 subunit alpha

Geranylgeranyl transferase type-2 subunit beta

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