SMTL ID : 3i26.1 (1 other biounit)

Structure of bovine torovirus Hemagglutinin-Esterase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 3 residues within 4Å: Chain A: K.49, N.62, S.68 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 6 residues within 4Å: Chain A: V.207, S.208, T.241, N.243 Chain B: T.219, I.222 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:I.222 NAG-NAG.6: 2 residues within 4Å: Chain B: M.34, N.308 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 6 residues within 4Å: Chain B: D.284, G.287, Q.288, F.297, N.299, K.300 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-MAN.3: 6 residues within 4Å: Chain A: D.284, G.287, Q.288, F.297, N.299, K.300 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.4: 5 residues within 4Å: Chain A: N.329, P.340, L.341 Chain B: L.363, F.364 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:F.364

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.5: 5 residues within 4Å: Chain B: T.28, K.49, N.62, S.68, D.70 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.49

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.8: 1 residues within 4Å: Chain A: N.308 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.308 NAG.9: 2 residues within 4Å: Chain A: T.262, N.264 No protein-ligand interaction detected (PLIP) NAG.10: 3 residues within 4Å: Chain B: S.164, Q.166, N.243 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.164, B:Q.166 Water bridges: B:S.132, B:S.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Langereis, M.A. et al., Structural basis for ligand and substrate recognition by torovirus hemagglutinin esterases. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-09-15

Peptides

Hemagglutinin-esterase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Hemagglutinin-esterase

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