SMTL ID : 3i27.2 (1 other biounit)

Structure of bovine torovirus Hemagglutinin-Esterase in complex with receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 5 residues within 4Å: Chain A: D.284, G.287, F.297, N.299, K.300 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 4 residues within 4Å: Chain B: K.49, N.62, S.68, D.70 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.49 NAG-NAG.3: 4 residues within 4Å: Chain A: F.364 Chain B: N.329, P.340, L.341 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.364

1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-MAN-MAN-MAN-MAN.4: 10 residues within 4Å: Chain B: E.278, Y.280, A.281, S.282, D.284, G.287, Q.288, F.297, N.299, K.300 No protein-ligand interaction detected (PLIP)

1 x SID: methyl 9-S-acetyl-5-acetamido-3,5-dideoxy-9-thio-D-glycero-alpha-D-galacto-non-2-ulopyranosidonic acid(Non-covalent)

SID.5: 11 residues within 4Å: Chain B: W.95, G.140, V.141, R.143, L.154, L.156, F.193, T.194, T.195, G.196, E.226 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:L.156 Hydrogen bonds: B:V.141, B:R.143, B:T.194, B:T.195, B:G.196

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 4 residues within 4Å: Chain B: V.207, S.208, T.241, N.243 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:T.241 Hydrogen bonds: B:D.209 NAG.7: 2 residues within 4Å: Chain B: M.34, N.308 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.308

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Langereis, M.A. et al., Structural basis for ligand and substrate recognition by torovirus hemagglutinin esterases. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-09-15

Peptides

Hemagglutinin-esterase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Hemagglutinin-esterase

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