- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x K: POTASSIUM ION(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 7 residues within 4Å:- Chain A: A.49, E.84, Y.106
- Chain B: N.80, Y.106
- Ligands: K.2, GOL.6
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:A.49, A:E.84, B:N.80
- Water bridges: B:N.80
GOL.4: 4 residues within 4Å:- Chain A: S.111, Q.112
- Chain B: E.246, P.247
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:Q.112
- Water bridges: A:P.110, A:S.111, A:Q.112, A:Q.112, A:E.113
GOL.5: 1 residues within 4Å:- Chain A: R.109
3 PLIP interactions:1 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:S.137, A:R.109, A:R.109
GOL.6: 7 residues within 4Å:- Chain A: S.48, A.49, G.78, Y.106
- Chain B: N.80, Y.107
- Ligands: GOL.3
8 PLIP interactions:5 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:S.48, B:N.80, B:N.80
- Water bridges: A:S.48, A:G.78, A:G.78, A:V.103, B:Y.107
GOL.11: 7 residues within 4Å:- Chain A: N.80, Y.107
- Chain B: S.48, A.49, G.78, V.103, Y.106
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:N.80, A:N.80, B:S.48, B:S.48, B:G.78
- Water bridges: A:Y.107, B:G.78
GOL.12: 2 residues within 4Å:- Chain A: S.137
- Chain B: R.109
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:S.137, B:R.109, B:R.109
- Water bridges: A:D.187
GOL.16: 7 residues within 4Å:- Chain C: A.49, E.84, Y.106
- Chain D: N.80, Y.106
- Ligands: K.15, GOL.19
6 PLIP interactions:4 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:A.49, C:E.84, D:N.80
- Water bridges: C:Y.106, C:Y.106, D:N.80
GOL.17: 4 residues within 4Å:- Chain C: S.111, Q.112
- Chain D: E.246, P.247
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:Q.112
- Water bridges: C:P.110, C:S.111, C:Q.112, C:Q.112, C:E.113
GOL.18: 1 residues within 4Å:- Chain C: R.109
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:R.109, C:R.109, D:S.137
GOL.19: 7 residues within 4Å:- Chain C: S.48, A.49, G.78, Y.106
- Chain D: N.80, Y.107
- Ligands: GOL.16
8 PLIP interactions:5 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: C:S.48, D:N.80, D:N.80
- Water bridges: C:S.48, C:G.78, C:G.78, C:V.103, D:Y.107
GOL.24: 7 residues within 4Å:- Chain C: N.80, Y.107
- Chain D: S.48, A.49, G.78, V.103, Y.106
6 PLIP interactions:2 interactions with chain C, 4 interactions with chain D- Hydrogen bonds: C:N.80, C:N.80, D:S.48, D:S.48, D:G.78
- Water bridges: D:G.78
GOL.25: 2 residues within 4Å:- Chain C: S.137
- Chain D: R.109
3 PLIP interactions:1 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:S.137, D:R.109, D:R.109
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.7: 4 residues within 4Å:- Chain A: A.8, T.44, T.45, R.161
Ligand excluded by PLIPCL.13: 4 residues within 4Å:- Chain B: A.8, T.44, T.45, R.161
Ligand excluded by PLIPCL.20: 4 residues within 4Å:- Chain C: A.8, T.44, T.45, R.161
Ligand excluded by PLIPCL.26: 4 residues within 4Å:- Chain D: A.8, T.44, T.45, R.161
Ligand excluded by PLIP- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Soares da Costa, T.P. et al., How essential is the 'essential' active-site lysine in dihydrodipicolinate synthase?. Biochimie (2010)
- Release Date
- 2010-04-14
- Peptides
- Dihydrodipicolinate synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x K: POTASSIUM ION(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Soares da Costa, T.P. et al., How essential is the 'essential' active-site lysine in dihydrodipicolinate synthase?. Biochimie (2010)
- Release Date
- 2010-04-14
- Peptides
- Dihydrodipicolinate synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B