- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 16 x GOL: GLYCEROL(Non-functional Binders)
- 12 x K: POTASSIUM ION(Non-covalent)
K.3: 4 residues within 4Å:- Chain A: A.152, V.154, K.155, I.157
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:A.152, A:V.154, A:I.157
K.4: 4 residues within 4Å:- Chain A: S.48, A.49, L.51
- Ligands: GOL.5
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:S.48, A:L.51, H2O.3, H2O.3
K.11: 1 residues within 4Å:- Chain B: H.125
No protein-ligand interaction detected (PLIP)K.12: 3 residues within 4Å:- Chain B: S.48, A.49, L.51
2 PLIP interactions:1 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:L.51, H2O.7
K.14: 1 residues within 4Å:- Chain B: E.84
No protein-ligand interaction detected (PLIP)K.15: 4 residues within 4Å:- Chain B: A.152, V.154, K.155, I.157
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:A.152, B:V.154, B:I.157
K.22: 4 residues within 4Å:- Chain C: A.152, V.154, K.155, I.157
3 PLIP interactions:3 interactions with chain C- Metal complexes: C:A.152, C:V.154, C:I.157
K.23: 4 residues within 4Å:- Chain C: S.48, A.49, L.51
- Ligands: GOL.24
4 PLIP interactions:2 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:S.48, C:L.51, H2O.9, H2O.9
K.30: 1 residues within 4Å:- Chain D: H.125
No protein-ligand interaction detected (PLIP)K.31: 3 residues within 4Å:- Chain D: S.48, A.49, L.51
2 PLIP interactions:1 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:L.51, H2O.13
K.33: 1 residues within 4Å:- Chain D: E.84
No protein-ligand interaction detected (PLIP)K.34: 4 residues within 4Å:- Chain D: A.152, V.154, K.155, I.157
3 PLIP interactions:3 interactions with chain D- Metal complexes: D:A.152, D:V.154, D:I.157
- 4 x PYR: PYRUVIC ACID(Non-covalent)
PYR.6: 7 residues within 4Å:- Chain A: A.8, G.43, T.44, T.45, L.101, Y.133, I.203
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:T.44, A:T.44, A:T.45
- Water bridges: A:Y.133, B:Y.107
PYR.18: 8 residues within 4Å:- Chain B: A.8, G.43, T.44, T.45, L.101, Y.133, I.203, V.205
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:T.44, B:T.44, B:T.45, B:T.45
- Water bridges: B:Y.133, B:V.205
PYR.25: 7 residues within 4Å:- Chain C: A.8, G.43, T.44, T.45, L.101, Y.133, I.203
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:T.44, C:T.45, C:T.45
- Water bridges: C:Y.133, C:Y.133
PYR.37: 8 residues within 4Å:- Chain D: A.8, G.43, T.44, T.45, L.101, Y.133, I.203, V.205
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:T.44, D:T.45
- Water bridges: D:Y.133, D:V.205
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.7: 2 residues within 4Å:- Chain A: R.21, K.25
3 PLIP interactions:3 interactions with chain A- Water bridges: A:R.21
- Salt bridges: A:R.21, A:K.25
PO4.8: 1 residues within 4Å:- Chain A: R.109
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.109
PO4.19: 1 residues within 4Å:- Chain B: R.109
3 PLIP interactions:3 interactions with chain B- Water bridges: B:R.109, B:R.109
- Salt bridges: B:R.109
PO4.26: 2 residues within 4Å:- Chain C: R.21, K.25
3 PLIP interactions:3 interactions with chain C- Water bridges: C:R.21
- Salt bridges: C:R.21, C:K.25
PO4.27: 1 residues within 4Å:- Chain C: R.109
1 PLIP interactions:1 interactions with chain C- Salt bridges: C:R.109
PO4.38: 1 residues within 4Å:- Chain D: R.109
3 PLIP interactions:3 interactions with chain D- Water bridges: D:R.109, D:R.109
- Salt bridges: D:R.109
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Soares da Costa, T.P. et al., How essential is the 'essential' active-site lysine in dihydrodipicolinate synthase?. Biochimie (2010)
- Release Date
- 2010-04-14
- Peptides
- Dihydrodipicolinate synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 16 x GOL: GLYCEROL(Non-functional Binders)
- 12 x K: POTASSIUM ION(Non-covalent)
- 4 x PYR: PYRUVIC ACID(Non-covalent)
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Soares da Costa, T.P. et al., How essential is the 'essential' active-site lysine in dihydrodipicolinate synthase?. Biochimie (2010)
- Release Date
- 2010-04-14
- Peptides
- Dihydrodipicolinate synthase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B