SMTL ID : 3id5.1

Crystal structure of Sulfolobus solfataricus C/D RNP assembled with Nop5, fibrillarin, L7Ae and a split half C/D RNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 4.01 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 13 residues within 4Å: Chain B: R.58, K.60, Y.82, G.84, T.90, E.108, F.109, A.132, D.133, A.134, D.153, I.154, Q.156 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:R.58, B:Y.82, B:T.89, B:T.90, B:T.90, B:T.90, B:F.109, B:D.133, B:D.133, B:A.134, B:D.153, B:A.155, B:Q.156 Salt bridges: B:D.153 SAM.2: 13 residues within 4Å: Chain F: R.58, K.60, Y.82, G.84, T.90, E.108, F.109, A.132, D.133, A.134, D.153, I.154, Q.156 9 PLIP interactions: 9 interactions with chain F Hydrogen bonds: F:R.58, F:T.89, F:T.90, F:T.90, F:F.109, F:D.133, F:A.134, F:Q.156 Salt bridges: F:D.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ye, K. et al., Structural organization of box C/D RNA-guided RNA methyltransferase. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-08-25

Peptides

Pre mRNA splicing protein: AE
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase: BF
50S ribosomal protein L7Ae: CG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

Pre mRNA splicing protein

Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase

50S ribosomal protein L7Ae

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