SMTL ID : 3igl.1

Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs (p53-DNA complex 1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.83, H.86, C.145, C.149 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.83, A:H.86, A:C.145, A:C.149 ZN.3: 4 residues within 4Å: Chain C: C.83, H.86, C.145, C.149 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.83, C:H.86, C:C.145, C:C.149

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: E.105, G.106, T.138, H.140 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.106, A:H.140 Water bridges: A:H.140 EDO.4: 4 residues within 4Å: Chain C: E.105, G.106, T.138, H.140 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:G.106, C:H.140 Water bridges: C:H.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kitayner, M. et al., Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs. Nat.Struct.Mol.Biol. (2010)

Release Date

2010-03-31

Peptides

Cellular tumor antigen p53: AC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

Cellular tumor antigen p53

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