SMTL ID : 3in5.2 (1 other biounit)

Structure of human DNA polymerase kappa inserting dATP opposite an 8-oxoG DNA lesion

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 17 residues within 4Å: Chain A: A.8, D.89, M.90, A.92, F.93, Y.94, S.119, T.120, Y.123, R.126, D.180, E.181, K.310 Chain B: C.13 Chain C: G.5, G.6 Ligands: MG.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.94, A:T.120 Hydrogen bonds: A:A.92, A:F.93, A:Y.94, A:Y.123 Salt bridges: A:R.126, A:R.126, A:K.310

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.89, M.90, D.180 Ligands: ATP.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.89, A:M.90, A:D.180 MG.3: 5 residues within 4Å: Chain A: R.334, V.336, G.338, I.339 Chain B: T.12 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:R.334, A:V.336, A:I.339

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vasquez-Del Carpio, R. et al., Structure of human DNA polymerase kappa inserting dATP opposite an 8-oxoG DNA lesion. PLOS ONE (2009)

Release Date

2009-09-08

Peptides

DNA polymerase kappa: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DNA polymerase kappa

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