SMTL ID : 3inu.2 (1 other biounit)

Crystal structure of an unbound KZ52 neutralizing anti-Ebolavirus antibody.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: P.14, S.124, S.125 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.125 SO4.2: 4 residues within 4Å: Chain A: F.27, T.28, N.31, Y.32 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.28, A:N.31, A:Y.32 SO4.3: 5 residues within 4Å: Chain A: S.52, S.53, S.54, T.104, G.105 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.52, A:S.53, A:S.54, A:G.105 SO4.5: 5 residues within 4Å: Chain B: Q.43, K.45, Q.48, K.51 Ligands: GOL.6 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.45, B:K.51

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: R.38, Q.39, A.40, K.43, G.44, E.46 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.38, A:A.40, A:E.46 GOL.6: 10 residues within 4Å: Chain B: Q.43, K.45, K.51, L.53, P.65, R.67, F.68, E.87, D.88 Ligands: SO4.5 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Q.43, B:K.45, B:K.51, B:K.51, B:R.67, B:E.87, B:D.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, J.E. et al., Techniques and tactics used in determining the structure of the trimeric ebolavirus glycoprotein. Acta Crystallogr.,Sect.D (2009)

Release Date

2009-10-27

Peptides

KZ52 antibody fragment heavy chain: A
KZ52 antibody fragment light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
M

B
N

KZ52 antibody fragment heavy chain

KZ52 antibody fragment light chain

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