SMTL ID : 3iph.1

Crystal structure of p38 in complex with a biphenylamide inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x G11: 6-[5-(cyclopropylcarbamoyl)-2-methylphenyl]-N-(cyclopropylmethyl)pyridine-3-carboxamide(Non-covalent)

G11.1: 15 residues within 4Å: Chain A: A.51, K.53, E.71, L.75, I.84, T.106, H.107, L.108, M.109, A.111, D.112, L.167, D.168, F.169, L.171 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:A.51, A:E.71, A:L.75, A:L.75, A:I.84, A:T.106, A:L.167, A:F.169 Hydrogen bonds: A:E.71, A:E.71, A:M.109, A:D.168, A:D.168

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: M.109, G.110, N.159, E.160 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.110, A:E.160, A:E.160 Water bridges: A:L.108

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: R.70, G.170, L.171, E.328 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.328 Water bridges: A:R.70, A:R.70, A:E.328 GOL.4: 7 residues within 4Å: Chain A: Q.120, K.121, L.122, L.216, L.217, T.218, G.219 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.122, A:L.216 GOL.5: 4 residues within 4Å: Chain A: E.215, G.219, R.220, T.221 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.215, A:R.220, A:R.220, A:T.221 Water bridges: A:Y.182, A:Y.182, A:T.221 GOL.6: 3 residues within 4Å: Chain A: A.271, P.279, V.282 3 PLIP interactions: 3 interactions with chain A Water bridges: A:A.271, A:D.283, A:D.283 GOL.7: 2 residues within 4Å: Chain A: N.26, F.42 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.26 GOL.8: 5 residues within 4Å: Chain A: D.125, H.126, F.129, D.161, Y.311 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.125, A:D.161

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aston, N.M. et al., p38alpha mitogen-activated protein kinase inhibitors: optimization of a series of biphenylamides to give a molecule suitable for clinical progression. J.Med.Chem. (2009)

Release Date

2009-11-24

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

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