SMTL ID : 3ipo.2 (1 other biounit)

Crystal structure of YnjE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 8 residues within 4Å: Chain A: E.153, A.155, A.158, P.159, K.160, L.161, Y.162, Y.172 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.160, A:K.160, A:L.161, A:Y.162, A:Y.172 PO4.7: 9 residues within 4Å: Chain B: E.153, A.155, A.158, P.159, K.160, L.161, Y.162, Y.172, R.212 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.153, B:A.158, B:K.160, B:L.161, B:Y.162

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 7 residues within 4Å: Chain A: L.183, W.184, N.185, R.219, T.368, D.391, G.392 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.219, A:D.391 NA.8: 6 residues within 4Å: Chain B: L.183, W.184, N.185, R.219, T.368, D.391 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:W.184, B:R.219

1 x PE4: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-functional Binders)

PE4.3: 11 residues within 4Å: Chain B: W.156, W.184, Y.215, G.306, Y.307, S.308, Y.309, S.328, T.329, T.368, W.370 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.307, B:S.308, B:S.308, B:S.328

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 8 residues within 4Å: Chain B: S.296, W.297, W.321, H.323, G.325, S.326, D.333 Ligands: PG0.5 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:W.297, B:G.325 Water bridges: B:D.333, B:D.333

2 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)

PG0.5: 3 residues within 4Å: Chain B: W.297, P.298 Ligands: GOL.4 No protein-ligand interaction detected (PLIP) PG0.6: 3 residues within 4Å: Chain B: M.277, E.278, R.281 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.281

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hanzelmann, P. et al., Crystal structure of YnjE from Escherichia coli, a sulfurtransferase with three rhodanese domains. Protein Sci. (2009)

Release Date

2009-12-08

Peptides

Putative thiosulfate sulfurtransferase ynjE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative thiosulfate sulfurtransferase ynjE

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