SMTL ID : 3iur.1

apPEP_D266Nx+H2H3 opened state

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

hetero-1-2-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: D.288, N.289, K.290, G.338, Y.357, H.380 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.289 Water bridges: A:G.291 GOL.2: 7 residues within 4Å: Chain A: K.80, E.81, G.82, F.94, K.95, N.96, N.103 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.95 GOL.3: 5 residues within 4Å: Chain A: T.436, R.492, A.500, A.504 Ligands: 15P.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.436, A:R.492

1 x 15P: POLYETHYLENE GLYCOL (N=34)(Non-functional Binders)

15P.4: 10 residues within 4Å: Chain A: Q.328, T.436, R.437, Y.497, G.498, Q.499, A.500, W.501 Chain C: L.11 Ligands: GOL.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.328, A:R.437, A:G.498, A:G.498, A:W.501

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, M. et al., Induced-fit mechanism for prolyl endopeptidase. J.Biol.Chem. (2010)

Release Date

2010-05-05

Peptides

Prolyl Endopeptidase: A
H2H3 helices from villin headpiece subdomain HP35: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Prolyl Endopeptidase

H2H3 helices from villin headpiece subdomain HP35

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