SMTL ID : 3ive.1

Putative 5'-Nucleotidase (c4898) from Escherichia Coli in complex with Cytidine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 6 residues within 4Å: Chain A: D.14, H.16, D.61, H.235 Ligands: FE.2, SO4.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.14, A:H.16, A:D.61, A:H.235

1 x FE: FE (III) ION(Non-covalent)

FE.2: 6 residues within 4Å: Chain A: D.61, N.93, H.194, H.233 Ligands: MN.1, SO4.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.61, A:H.194, A:H.233

1 x CTN: 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE(Non-covalent)

CTN.3: 15 residues within 4Å: Chain A: N.93, H.94, D.97, T.157, S.159, P.198, N.352, G.354, G.355, R.357, F.376, N.378, F.448, D.454 Ligands: SO4.4 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.159, A:N.352, A:R.357, A:R.357, A:N.378, A:N.378 Water bridges: A:Q.201, A:G.354 pi-Stacking: A:F.376, A:F.448

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 13 residues within 4Å: Chain A: D.14, H.16, D.61, N.93, H.94, P.198, A.199, H.233, H.235, R.357 Ligands: MN.1, FE.2, CTN.3 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:A.199 Water bridges: A:Q.201 Salt bridges: A:H.16, A:H.94, A:H.233, A:H.235, A:R.357

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 6 residues within 4Å: Chain A: G.150, F.152, A.153, E.195, G.196, K.215 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramagopal, U.A. et al., Putative 5'-Nucleotidase (c4898) from Escherichia Coli in complex with Cytidine. To be Published

Release Date

2009-09-29

Peptides

Nucleotidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nucleotidase

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