SMTL ID : 3ivm.1

apPEP_WT+PP closed state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

2 x ZPR: N-BENZYLOXYCARBONYL-L-PROLYL-L-PROLINAL(Covalent)(Non-covalent)

ZPR.1: 10 residues within 4Å: Chain A: T.256, Y.461, F.464, S.541, N.542, V.567, W.582, Y.586, R.627, V.628 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.464, A:F.464, A:V.567, A:W.582, A:W.582, A:V.628 Hydrogen bonds: A:N.542, A:R.627 ZPR.2: 10 residues within 4Å: Chain A: Y.459, S.475, Y.486, R.538, G.540, S.541, V.565, H.660, S.673, Y.677 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.565, A:Y.677 Hydrogen bonds: A:R.538 Water bridges: A:S.475

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, M. et al., Induced-fit mechanism for prolyl endopeptidase. J.Biol.Chem. (2010)

Release Date

2010-05-05

Peptides

prolyl endopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

prolyl endopeptidase

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