SMTL ID : 3j0p.1

Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x C- G- A- G- G- A- A: 40S ribosomal RNA fragment(Non-functional Binders)

C-G-A-G-G-A-A.1: 10 residues within 4Å: Chain C: G.1 Chain D: A.12, C.13 Chain O: G.30, G.31, G.32, C.33, C.41, C.42, G.43 No protein-ligand interaction detected (PLIP)

2 x U- U- C: mRNA fragment(Non-functional Binders)

U-U-C.2: 7 residues within 4Å: Chain F: A.103, A.104, G.105 Chain N: G.34, A.35, A.36, A.37 Protein-ligand interaction information (PLIP) not available U-U-C.3: 5 residues within 4Å: Chain O: U.34, C.35, A.36, U.37, A.38 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Budkevich, T. et al., Structure and dynamics of the Mammalian ribosomal pretranslocation complex. Mol.Cell (2011)

Release Date

2011-11-16

Peptides

Ribosomal protein S15: G
Ribosomal protein S23: H
Ribosomal protein S30: I
Ribosomal protein L10a: M

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

G
S

H
L

I
X

M
B

Ribosomal protein S15

Ribosomal protein S23

Ribosomal protein S30

Ribosomal protein L10a

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