SMTL ID : 3j2q.1

Model of membrane-bound factor VIII organized in 2D crystals

Coordinates

PDB Format Compare

Method

ELECTRON CRYSTALLOGRAPHY

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.239, R.240, H.317 No protein-ligand interaction detected (PLIP)

1 x NAG- BMA- MAN- BMA: alpha-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-BMA-MAN-BMA.2: 4 residues within 4Å: Chain B: Q.222, T.224, Q.290, R.291 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.224, B:T.224

2 x CU: COPPER (II) ION(Non-covalent)

CU.3: 4 residues within 4Å: Chain A: H.232, H.267, C.310, H.315 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.267, A:C.310 CU.7: 5 residues within 4Å: Chain B: I.305, H.306, C.352, I.354, H.357 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.306, B:C.352, B:H.357

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 8 residues within 4Å: Chain A: K.107, S.109, E.110, D.116, T.118, E.122, D.125, D.126 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:K.107, A:E.122, A:D.125, A:D.126, A:D.126

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 2 residues within 4Å: Chain B: A.131, N.162 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.131 NAG.6: 3 residues within 4Å: Chain A: R.121 Chain B: N.470, N.493 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.121, A:R.121, B:N.493

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stoilova-McPhie, S. et al., Domain organization of membrane-bound factor VIII. Biopolymers (2013)

Release Date

2013-09-11

Peptides

Coagulation factor VIII heavy chain: A
Coagulation factor VIII light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Coagulation factor VIII heavy chain

Coagulation factor VIII light chain

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