SMTL ID : 3j6q.1

Identification of the active sites in the methyltransferases of a transcribing dsRNA virus

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-pentamer

Ligands

10 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Covalent)(Non-covalent)

SAH.1: 11 residues within 4Å: Chain A: S.528, G.562, A.563, E.564, E.566, D.589, R.590, V.600, I.617, N.618, S.619 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.528, A:A.563, A:D.589, A:R.590, A:V.600, A:V.600, A:S.619 Salt bridges: A:R.590 SAH.2: 9 residues within 4Å: Chain A: I.861, G.863, P.883, P.903, F.904, V.924, P.929, Y.992 Chain E: N.607 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain E Hydrophobic interactions: A:Y.992 Hydrogen bonds: A:A.884, A:F.904, A:F.904, E:N.607 Salt bridges: A:K.838 SAH.3: 11 residues within 4Å: Chain B: S.528, G.562, A.563, E.564, E.566, D.589, R.590, V.600, I.617, N.618, S.619 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:S.528, B:A.563, B:D.589, B:R.590, B:V.600, B:V.600, B:S.619 Salt bridges: B:R.590 SAH.4: 10 residues within 4Å: Chain A: N.607 Chain B: I.861, G.863, D.882, P.883, P.903, F.904, V.924, P.929, Y.992 6 PLIP interactions: 1 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:N.607, B:A.884, B:F.904, B:F.904 Hydrophobic interactions: B:Y.992 Salt bridges: B:K.838 SAH.5: 11 residues within 4Å: Chain C: S.528, G.562, A.563, E.564, E.566, D.589, R.590, V.600, I.617, N.618, S.619 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:S.528, C:A.563, C:D.589, C:R.590, C:V.600, C:V.600, C:S.619 Salt bridges: C:R.590 SAH.6: 10 residues within 4Å: Chain B: N.607 Chain C: I.861, G.863, D.882, P.883, P.903, F.904, V.924, P.929, Y.992 6 PLIP interactions: 1 interactions with chain B, 5 interactions with chain C Hydrogen bonds: B:N.607, C:A.884, C:F.904, C:F.904 Hydrophobic interactions: C:Y.992 Salt bridges: C:K.838 SAH.7: 11 residues within 4Å: Chain D: S.528, G.562, A.563, E.564, E.566, D.589, R.590, V.600, I.617, N.618, S.619 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:S.528, D:A.563, D:D.589, D:R.590, D:V.600, D:V.600, D:S.619 Salt bridges: D:R.590 SAH.8: 10 residues within 4Å: Chain C: N.607 Chain D: I.861, G.863, D.882, P.883, P.903, F.904, V.924, P.929, Y.992 6 PLIP interactions: 5 interactions with chain D, 1 interactions with chain C Hydrophobic interactions: D:Y.992 Hydrogen bonds: D:A.884, D:F.904, D:F.904, C:N.607 Salt bridges: D:K.838 SAH.9: 11 residues within 4Å: Chain E: S.528, G.562, A.563, E.564, E.566, D.589, R.590, V.600, I.617, N.618, S.619 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:S.528, E:A.563, E:D.589, E:R.590, E:V.600, E:V.600, E:S.619 Salt bridges: E:R.590 SAH.10: 10 residues within 4Å: Chain D: N.607 Chain E: I.861, G.863, D.882, P.883, P.903, F.904, V.924, P.929, Y.992 6 PLIP interactions: 5 interactions with chain E, 1 interactions with chain D Hydrophobic interactions: E:Y.992 Hydrogen bonds: E:A.884, E:F.904, E:F.904, D:N.607 Salt bridges: E:K.838

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, B. et al., Identification of the active sites in the methyltransferases of a transcribing dsRNA virus. J.Mol.Biol. (2014)

Release Date

2014-10-08

Peptides

Structural protein VP3: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Structural protein VP3

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