SMTL ID : 3ja8.1

Cryo-EM structure of the MCM2-7 double hexamer

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 10 residues within 4Å: Chain A: I.505, G.546, T.547, A.548, K.549, S.550, Q.551, E.608, L.695 Chain E: R.798 11 PLIP interactions: 1 interactions with chain E, 10 interactions with chain A Hydrogen bonds: E:R.798, A:I.505, A:G.546, A:S.550, A:S.550, A:Q.551, A:Q.551, A:E.608, A:E.608 Salt bridges: A:K.549, A:K.549 ADP.2: 14 residues within 4Å: Chain B: S.370, I.371, Y.372, P.411, S.412, T.413, A.414, K.415, S.416, Q.417 Chain D: Q.499, R.549, I.650, R.651 12 PLIP interactions: 3 interactions with chain D, 9 interactions with chain B Hydrogen bonds: D:Q.499, B:Y.372, B:S.412, B:A.414, B:A.414, B:K.415, B:S.416, B:S.416, B:S.416, B:Q.417 Salt bridges: D:R.549, D:R.651 ADP.3: 14 residues within 4Å: Chain C: S.529, I.530, Y.531, P.570, S.571, T.572, S.573, K.574, S.575, Q.576, L.720, L.724 Chain F: R.593, R.687 11 PLIP interactions: 8 interactions with chain C, 3 interactions with chain F Hydrogen bonds: C:Y.531, C:Y.531, C:S.571, C:T.572, C:S.573, C:K.574, C:S.575, C:Q.576 Salt bridges: F:R.593, F:R.687, F:R.687 ADP.4: 15 residues within 4Å: Chain A: R.676, V.807, R.808 Chain D: S.377, I.378, F.379, P.418, G.419, T.420, A.421, K.422, S.423, Q.424, I.568, I.575 15 PLIP interactions: 12 interactions with chain D, 3 interactions with chain A Hydrogen bonds: D:F.379, D:F.379, D:G.419, D:T.420, D:A.421, D:S.423, D:S.423, D:S.423, D:Q.424, D:Q.424 Salt bridges: D:K.422, D:K.422, A:R.676, A:R.808, A:R.808 ADP.5: 13 residues within 4Å: Chain C: E.650, R.701, T.795, R.796 Chain E: A.536, V.537, F.538, P.577, S.578, T.579, S.580, K.581, S.582 10 PLIP interactions: 8 interactions with chain E, 2 interactions with chain C Hydrogen bonds: E:F.538, E:F.538, E:S.578, E:S.580, E:S.580, E:K.581, E:S.582, E:S.582, C:R.796 Salt bridges: C:R.701 ADP.6: 16 residues within 4Å: Chain B: E.491, R.542, A.699, R.700, E.703 Chain F: E.421, I.422, Y.423, P.462, G.463, V.464, A.465, K.466, S.467, Q.468, V.616 13 PLIP interactions: 8 interactions with chain F, 5 interactions with chain B Hydrogen bonds: F:Y.423, F:Y.423, F:P.462, F:G.463, F:A.465, F:K.466, F:S.467, F:Q.468, B:E.491, B:E.491, B:E.703 Salt bridges: B:R.542, B:R.700

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, N. et al., Structure of the eukaryotic MCM complex at 3.8 angstrom. Nature (2015)

Release Date

2015-08-05

Peptides

Minichromosome Maintenance 2: A
Minichromosome Maintenance 3: B
Minichromosome Maintenance 4: C
Minichromosome Maintenance 5: D
Minichromosome Maintenance 6: E
Minichromosome Maintenance 7: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
2

B
3

C
4

D
5

E
6

F
7

Minichromosome Maintenance 2

Minichromosome Maintenance 3

Minichromosome Maintenance 4

Minichromosome Maintenance 5

Minichromosome Maintenance 6

Minichromosome Maintenance 7

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