SMTL ID : 3jbx.1

Cryo-electron microscopy structure of RAG Signal End Complex (C2 symmetry)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.40 Å

Oligo State

hetero-2-2-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.482, L.484, C.485, H.692, H.697 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.482, A:C.485, A:H.692, A:H.697 ZN.4: 4 residues within 4Å: Chain C: C.482, C.485, H.692, H.697 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.482, C:C.485, C:H.692, C:H.697

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 7 residues within 4Å: Chain A: D.353, G.354, D.463, E.717 Chain G: G.15 Chain J: C.14 Ligands: MG.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.353, A:E.717 MG.3: 5 residues within 4Å: Chain A: G.354, E.417, D.463 Chain J: C.14 Ligands: MG.2 No protein-ligand interaction detected (PLIP) MG.5: 7 residues within 4Å: Chain C: D.353, G.354, D.463, E.717 Chain F: G.15 Chain L: C.14 Ligands: MG.6 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.353, C:E.717 MG.6: 5 residues within 4Å: Chain C: G.354, E.417, D.463 Chain L: C.14 Ligands: MG.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ru, H. et al., Molecular Mechanism of V(D)J Recombination from Synaptic RAG1-RAG2 Complex Structures. Cell(Cambridge,Mass.) (2015)

Release Date

2015-12-09

Peptides

V(D)J recombination-activating protein 1: AC
V(D)J recombination-activating protein 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

V(D)J recombination-activating protein 1

V(D)J recombination-activating protein 2

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