SMTL ID : 3jby.1

Cryo-electron microscopy structure of RAG Paired Complex (C2 symmetry)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.70 Å

Oligo State

hetero-2-2-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.482, C.485, S.487, H.692, H.697 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.482, A:H.692, A:H.697 ZN.4: 5 residues within 4Å: Chain C: C.482, C.485, H.499, H.692, H.697 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:C.482, C:H.692, C:H.697

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: D.353, G.354, E.717, N.720 Chain G: G.15, T.16 No protein-ligand interaction detected (PLIP) CA.3: 5 residues within 4Å: Chain A: D.353, E.417, D.463 Chain G: T.16 Chain I: A.16 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.353, A:E.417, A:D.463 CA.5: 6 residues within 4Å: Chain C: D.353, G.354, E.717, N.720 Chain F: G.15, T.16 No protein-ligand interaction detected (PLIP) CA.6: 5 residues within 4Å: Chain C: D.353, E.417, D.463 Chain F: T.16 Chain J: A.16 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.353, C:D.463

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ru, H. et al., Molecular Mechanism of V(D)J Recombination from Synaptic RAG1-RAG2 Complex Structures. Cell(Cambridge,Mass.) (2015)

Release Date

2015-12-09

Peptides

V(D)J recombination-activating protein 1: AC
V(D)J recombination-activating protein 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

V(D)J recombination-activating protein 1

V(D)J recombination-activating protein 2

Related Entries With Identical Sequence