SMTL ID : 3jcu.1

Cryo-EM structure of spinach PSII-LHCII supercomplex at 3.2 Angstrom resolution

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-2-2-2-2-2-2-6-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-2-mer
Ligands
2 x OEX: CA-MN4-O5 CLUSTER(Covalent)
2 x FE2: FE (II) ION(Non-covalent)
4 x CL: CHLORIDE ION(Non-functional Binders)
156 x CLA: CHLOROPHYLL A(Non-covalent)(Covalent)
4 x PHO: PHEOPHYTIN A(Non-covalent)
20 x BCR: BETA-CAROTENE(Non-covalent)
6 x SQD: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL(Non-covalent)
10 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)
8 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)
2 x BCT: BICARBONATE ION(Non-functional Binders)
2 x PL9: 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE(Non-covalent)
18 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)
2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
50 x CHL: CHLOROPHYLL B(Non-covalent)(Covalent)
18 x LUT: (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Non-covalent)
8 x XAT: (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL(Non-covalent)
10 x NEX: (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Wei, X.P. et al., Structure of spinach photosystem II-LHCII supercomplex at 3.2 A resolution. Nature (2016)
Release Date
2016-05-25
Peptides
Photosystem II protein D1: AZ
Photosystem II CP47 reaction center protein: B0
Photosystem II CP43 reaction center protein: C1
Photosystem II D2 protein: D2
Cytochrome b559 subunit alpha: E3
Cytochrome b559 subunit beta: F4
Chlorophyll a-b binding protein, chloroplastic: GNX5cm
Photosystem II reaction center protein H: H6
Protein Photosystem II reaction center protein I: I7
Photosystem II reaction center protein J: J8
Photosystem II reaction center protein K: K9
Protein Photosystem II reaction center protein L: La
Photosystem II reaction center protein M: Mb
Oxygen-evolving enhancer protein 1, chloroplastic: Od
Oxygen-evolving enhancer protein 2, chloroplastic: Pe
Oxygen-evolving enhancer protein 3, chloroplastic: Qf
Chlorophyll A-B Binding protein 29 kD (CP29): Rg
Chlorophyll A-B Binding protein 26 kD (CP26): Sh
Photosystem II Reaction Center protein Tc: Ti
Photosystem II Reaction Center Tn protein: Uj
Photosystem II reaction center W protein, chloroplastic: Vk
Photosystem II Reaction Center X protein: Wl
Photosystem II reaction center protein Z: Yn
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
Z
a
B
B
0
b
C
C
1
c
D
D
2
d
E
E
3
e
F
F
4
f
G
G
N
N
X
Y
5
g
c
n
m
y
H
H
6
h
I
I
7
i
J
J
8
j
K
K
9
k
L
L
a
l
M
M
b
m
O
O
d
o
P
P
e
p
Q
Q
f
q
R
R
g
r
S
S
h
s
T
T
i
t
U
U
j
u
V
W
k
w
W
X
l
x
Y
Z
n
z
Membrane
We predict this structure to be a membrane protein.

Photosystem II protein D1

Toggle Identical (AZ)

Photosystem II CP47 reaction center protein

Toggle Identical (B0)

Photosystem II CP43 reaction center protein

Toggle Identical (C1)

Photosystem II D2 protein

Toggle Identical (D2)

Cytochrome b559 subunit alpha

Toggle Identical (E3)

Cytochrome b559 subunit beta

Toggle Identical (F4)

Chlorophyll a-b binding protein, chloroplastic

Toggle Identical (GNX5cm)

Photosystem II reaction center protein H

Toggle Identical (H6)

Protein Photosystem II reaction center protein I

Toggle Identical (I7)

Photosystem II reaction center protein J

Toggle Identical (J8)

Photosystem II reaction center protein K

Toggle Identical (K9)

Protein Photosystem II reaction center protein L

Toggle Identical (La)

Photosystem II reaction center protein M

Toggle Identical (Mb)

Oxygen-evolving enhancer protein 1, chloroplastic

Toggle Identical (Od)

Oxygen-evolving enhancer protein 2, chloroplastic

Toggle Identical (Pe)

Oxygen-evolving enhancer protein 3, chloroplastic

Toggle Identical (Qf)

Chlorophyll A-B Binding protein 29 kD (CP29)

Toggle Identical (Rg)

Chlorophyll A-B Binding protein 26 kD (CP26)

Toggle Identical (Sh)

Photosystem II Reaction Center protein Tc

Toggle Identical (Ti)

Photosystem II Reaction Center Tn protein

Toggle Identical (Uj)

Photosystem II reaction center W protein, chloroplastic

Toggle Identical (Vk)

Photosystem II Reaction Center X protein

Toggle Identical (Wl)

Photosystem II reaction center protein Z

Toggle Identical (Yn)

Related Entries With Identical Sequence

3pl9.1 | 5mdx.1 | 5xnl.1 | 5xnm.1 | 7oui.1