SMTL ID : 3jq1.1 (1 other biounit)

Crystal structure of SusD superfamily protein (YP_001297730.1) from Bacteroides vulgatus ATCC 8482 at 1.55 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 1 residues within 4Å: Chain A: T.439 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.439, H2O.1, H2O.2, H2O.15, H2O.16 CA.2: 2 residues within 4Å: Chain A: L.168, Q.179 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:L.168, H2O.12, H2O.14, H2O.20, H2O.23 CA.3: 1 residues within 4Å: Chain A: S.70 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.70, H2O.2, H2O.5, H2O.20, H2O.23 CA.4: 3 residues within 4Å: Chain A: D.225, E.228, F.352 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.225, A:E.228, A:F.352, H2O.2, H2O.2

7 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain A: T.59, N.65, S.66, N.69 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: N.229 Ligands: CL.9 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain A: G.431, L.432, L.433, E.434 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain A: W.196, Q.197, K.374 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: K.173, I.174 Ligands: CL.6 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain A: R.62, T.443, N.447 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain A: N.278, T.330, Y.331 Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.12: 7 residues within 4Å: Chain A: F.76, Y.77, Y.80, P.131, R.133, E.468, N.472 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.133, A:N.472 EDO.13: 3 residues within 4Å: Chain A: E.217, D.218, Y.299 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.217, A:E.217 Water bridges: A:R.302

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of SusD superfamily protein (YP_001297730.1) from Bacteroides vulgatus ATCC 8482 at 1.55 A resolution. To be published

Release Date

2009-09-22

Peptides

SusD superfamily protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SusD superfamily protein

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