SMTL ID : 3jq1.2 (1 other biounit)

Crystal structure of SusD superfamily protein (YP_001297730.1) from Bacteroides vulgatus ATCC 8482 at 1.55 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

7 x CA: CALCIUM ION(Non-covalent)(Non-functional Binders)

CA.1: 3 residues within 4Å: Chain A: D.225, E.228, F.352 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.225, A:E.228, A:F.352, H2O.1, H2O.3 CA.2: 2 residues within 4Å: Chain A: E.434 Ligands: EDO.13 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.434, H2O.13, H2O.14, H2O.15 CA.3: 2 residues within 4Å: Chain A: L.168, Q.179 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:L.168, H2O.4, H2O.8, H2O.19, H2O.26 CA.4: 1 residues within 4Å: Chain A: S.70 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:S.70, H2O.6, H2O.9, H2O.11, H2O.17 CA.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CA.6: 1 residues within 4Å: Chain A: G.295 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:G.295, H2O.24, H2O.25, H2O.28 CA.7: 1 residues within 4Å: Chain A: T.439 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.439, H2O.11, H2O.27, H2O.27, H2O.30

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 4 residues within 4Å: Chain A: G.431, L.432, L.433, E.434 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain A: T.59, N.65, S.66, N.69 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain A: N.278, T.330, Y.331 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain A: R.62, N.447 Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.12: 3 residues within 4Å: Chain A: E.217, D.218, Y.299 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.217 Water bridges: A:Y.299, A:R.302, A:R.302 EDO.13: 7 residues within 4Å: Chain A: E.434, K.452, D.454, N.455, I.456, N.457 Ligands: CA.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.454 Water bridges: A:E.434, A:E.434

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of SusD superfamily protein (YP_001297730.1) from Bacteroides vulgatus ATCC 8482 at 1.55 A resolution. To be published

Release Date

2009-09-22

Peptides

SusD superfamily protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

SusD superfamily protein

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