SMTL ID : 3jq3.1 (1 other biounit)

Crystal Structure of Lombricine Kinase, complexed with substrate ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 16 residues within 4Å: Chain A: S.115, C.116, R.117, R.119, H.178, R.223, R.279, S.281, V.282, H.283, R.307, T.309, G.310, G.311, E.312, D.322 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:S.115, A:R.279, A:S.281, A:T.309, A:E.312 Water bridges: A:R.117, A:R.307, A:R.307 Salt bridges: A:R.117, A:R.119, A:R.223, A:R.279, A:R.279, A:R.307 pi-Stacking: A:H.283 ADP.2: 16 residues within 4Å: Chain B: S.115, C.116, R.117, R.119, H.178, R.223, R.279, S.281, V.282, H.283, R.307, T.309, G.310, G.311, E.312, D.322 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:S.115, B:R.279, B:S.281, B:T.309, B:E.312 Water bridges: B:R.117, B:R.307, B:R.307 Salt bridges: B:R.117, B:R.119, B:R.223, B:R.279, B:R.279, B:R.307 pi-Stacking: B:H.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bush, D.J. et al., The structure of lombricine kinase: implications for phosphagen kinase conformational changes. J.Biol.Chem. (2011)

Release Date

2010-09-15

Peptides

Lombricine kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Lombricine kinase

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