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SMTL ID : 3jsu.1
Quadruple mutant(N51I+C59R+S108N+I164L) plasmodium falciparum dihydrofolate reductase-thymidylate synthase(PFDHFR-TS) complexed with QN254, NADPH, and dUMP
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.70 Å
Oligo State
homo-dimer
Ligands
2 x
KA5
:
5-chloro-N~6~-(2,5-dimethoxybenzyl)quinazoline-2,4,6-triamine
(Non-covalent)
KA5.1:
17 residues within 4Å:
Chain A:
I.14
,
C.15
,
A.16
,
L.46
,
D.54
,
M.55
,
F.58
,
N.108
,
S.111
,
I.112
,
P.113
,
F.116
,
L.119
,
L.164
,
Y.170
,
T.185
Ligands:
NDP.2
11
PLIP interactions
:
11 interactions with chain A
Hydrophobic interactions:
A:L.46
,
A:I.112
,
A:F.116
Hydrogen bonds:
A:I.14
,
A:Y.170
,
A:T.185
,
A:T.185
Salt bridges:
A:D.54
pi-Stacking:
A:F.58
,
A:F.58
Halogen bonds:
A:N.108
KA5.4:
17 residues within 4Å:
Chain B:
I.14
,
C.15
,
A.16
,
L.46
,
D.54
,
M.55
,
F.58
,
N.108
,
S.111
,
I.112
,
P.113
,
F.116
,
L.119
,
L.164
,
Y.170
,
T.185
Ligands:
NDP.5
9
PLIP interactions
:
9 interactions with chain B
Hydrophobic interactions:
B:F.58
,
B:I.112
,
B:I.112
Hydrogen bonds:
B:I.14
,
B:T.185
,
B:T.185
Salt bridges:
B:D.54
pi-Stacking:
B:F.58
,
B:F.58
2 x
NDP
:
NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
(Non-covalent)
NDP.2:
28 residues within 4Å:
Chain A:
C.15
,
A.16
,
L.40
,
G.41
,
G.44
,
V.45
,
L.46
,
W.48
,
G.105
,
R.106
,
T.107
,
N.108
,
S.111
,
L.127
,
S.128
,
R.129
,
T.130
,
N.144
,
V.146
,
L.164
,
G.165
,
G.166
,
S.167
,
V.168
,
V.169
,
Y.170
,
E.172
Ligands:
KA5.1
25
PLIP interactions
:
25 interactions with chain A
Hydrophobic interactions:
A:L.40
Hydrogen bonds:
A:A.16
,
A:L.40
,
A:R.106
,
A:T.107
,
A:T.107
,
A:N.108
,
A:S.111
,
A:S.111
,
A:R.129
,
A:T.130
,
A:T.130
,
A:L.131
,
A:G.165
,
A:S.167
,
A:V.168
,
A:V.169
,
A:E.172
Water bridges:
A:R.129
,
A:R.129
,
A:R.129
,
A:R.129
,
A:R.129
Salt bridges:
A:R.106
pi-Cation interactions:
A:R.129
NDP.5:
30 residues within 4Å:
Chain B:
C.15
,
A.16
,
L.40
,
G.41
,
N.42
,
G.44
,
V.45
,
L.46
,
W.48
,
G.105
,
R.106
,
T.107
,
N.108
,
L.127
,
S.128
,
R.129
,
T.130
,
N.144
,
K.145
,
V.146
,
L.164
,
G.165
,
G.166
,
S.167
,
V.168
,
V.169
,
Y.170
,
E.172
,
V.195
Ligands:
KA5.4
21
PLIP interactions
:
21 interactions with chain B
Hydrophobic interactions:
B:L.40
Hydrogen bonds:
B:A.16
,
B:L.40
,
B:N.42
,
B:G.44
,
B:G.105
,
B:R.106
,
B:T.107
,
B:T.107
,
B:N.108
,
B:R.129
,
B:T.130
,
B:T.130
,
B:V.146
,
B:S.167
,
B:V.168
,
B:V.169
,
B:Y.170
,
B:E.172
Salt bridges:
B:R.106
pi-Cation interactions:
B:R.129
2 x
UMP
:
2'-DEOXYURIDINE 5'-MONOPHOSPHATE
(Non-covalent)
UMP.3:
14 residues within 4Å:
Chain A:
R.345
,
C.490
,
H.491
,
Q.509
,
R.510
,
S.511
,
C.512
,
D.513
,
G.517
,
N.521
,
H.551
,
Y.553
Chain B:
R.470
,
R.471
12
PLIP interactions
:
9 interactions with chain A
,
3 interactions with chain B
Hydrogen bonds:
A:Q.509
,
A:S.511
,
A:D.513
,
A:V.518
,
A:N.521
,
A:N.521
,
A:H.551
Salt bridges:
A:R.345
,
A:R.510
,
B:R.470
,
B:R.471
Water bridges:
B:R.470
UMP.6:
14 residues within 4Å:
Chain A:
R.470
,
R.471
Chain B:
R.345
,
C.490
,
H.491
,
Q.509
,
R.510
,
S.511
,
C.512
,
D.513
,
G.517
,
N.521
,
H.551
,
Y.553
12
PLIP interactions
:
9 interactions with chain B
,
3 interactions with chain A
Hydrogen bonds:
B:Q.509
,
B:S.511
,
B:D.513
,
B:N.521
,
B:N.521
,
B:H.551
,
B:Y.553
Salt bridges:
B:R.345
,
B:R.510
,
A:R.470
,
A:R.471
Water bridges:
A:R.470
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Nzila, A. et al., Preclinical evaluation of the antifolate QN254, 5-chloro- N'6'-(2,5-dimethoxy-benzyl)-quinazoline-2,4,6-triamine, as an antimalarial drug candidate. Antimicrob.Agents Chemother. (2010)
Release Date
2010-07-28
Peptides
Dihydrofolate reductase-thymidylate synthase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
Export Alignment
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Secondary Structure
None
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Colour Scheme
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Enhance Mismatches
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2° Structure
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Dihydrofolate reductase-thymidylate synthase
Related Entries With Identical Sequence
3qg2.1
|
4dp3.1
|
4dph.1
|
6a2l.1
|
6a2n.1
|
6a2p.1
|
6kot.1
|
6kp2.1
|
6kp7.1
|
6kpr.1
|
6leu.1
|
6lev.1
|
6lez.1
|
6lh9.1
|
6lhi.1
|
6lhj.1
|
8jfb.1
|
8jfc.1
|
8jfd.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
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High
Extreme