- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.59 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x MET: METHIONINE(Non-covalent)
- 2 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)
- 2 x E9X: 1-[3-[(4-chlorophenyl)-(phenylmethyl)amino]propoxy]-6,6-dimethyl-1,3,5-triazine-2,4-diamine(Non-covalent)
E9X.3: 20 residues within 4Å:- Chain A: I.14, C.15, A.16, L.46, W.48, D.54, M.55, Y.57, F.58, N.108, S.111, I.112, P.113, F.116, L.119, R.122, L.164, Y.170, T.185
- Ligands: NDP.4
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:A.16, A:F.58, A:I.112, A:L.119
- Hydrogen bonds: A:I.14, A:C.15, A:Y.170, A:T.185
- Salt bridges: A:D.54, A:D.54
E9X.6: 21 residues within 4Å:- Chain B: I.14, C.15, A.16, V.45, L.46, W.48, D.54, M.55, Y.57, F.58, N.108, S.111, I.112, P.113, F.116, L.119, R.122, L.164, Y.170, T.185
- Ligands: NDP.7
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:A.16, B:L.46, B:F.58, B:F.116
- Hydrogen bonds: B:I.14, B:C.15, B:Y.170, B:T.185
- Salt bridges: B:D.54
- 2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NDP.4: 33 residues within 4Å:- Chain A: C.15, A.16, L.40, G.41, N.42, G.44, V.45, L.46, P.47, W.48, G.105, R.106, T.107, N.108, S.111, L.127, S.128, R.129, T.130, L.131, N.144, K.145, V.146, L.164, G.165, G.166, S.167, V.168, V.169, Y.170, E.172, V.195
- Ligands: E9X.3
27 PLIP interactions:27 interactions with chain A- Hydrophobic interactions: A:L.40, A:L.46
- Hydrogen bonds: A:A.16, A:L.40, A:N.42, A:G.44, A:V.45, A:R.106, A:R.106, A:T.107, A:T.107, A:N.108, A:S.111, A:S.111, A:S.128, A:R.129, A:R.129, A:R.129, A:T.130, A:G.166, A:S.167, A:V.168, A:V.169, A:E.172
- Water bridges: A:T.107
- Salt bridges: A:R.106
- pi-Cation interactions: A:R.129
NDP.7: 32 residues within 4Å:- Chain B: C.15, A.16, L.40, G.41, N.42, G.44, V.45, L.46, W.48, G.105, R.106, T.107, N.108, S.111, L.127, S.128, R.129, T.130, I.143, N.144, K.145, V.146, L.164, G.165, G.166, S.167, V.168, V.169, Y.170, E.172, V.195
- Ligands: E9X.6
23 PLIP interactions:23 interactions with chain B- Hydrophobic interactions: B:L.40, B:L.46
- Hydrogen bonds: B:A.16, B:A.16, B:N.42, B:V.45, B:G.105, B:R.106, B:T.107, B:N.108, B:R.129, B:R.129, B:R.129, B:T.130, B:V.146, B:G.166, B:S.167, B:V.168, B:V.169, B:E.172
- Salt bridges: B:R.106
- pi-Cation interactions: B:R.129, B:R.129
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kamchonwongpaisan, S. et al., Flexible diaminodihydrotriazine inhibitors of Plasmodium falciparum dihydrofolate reductase: Binding strengths, modes of binding and their antimalarial activities. Eur.J.Med.Chem. (2020)
- Release Date
- 2020-12-09
- Peptides
- Bifunctional dihydrofolate reductase-thymidylate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.59 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x MET: METHIONINE(Non-covalent)
- 2 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)
- 2 x E9X: 1-[3-[(4-chlorophenyl)-(phenylmethyl)amino]propoxy]-6,6-dimethyl-1,3,5-triazine-2,4-diamine(Non-covalent)
- 2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kamchonwongpaisan, S. et al., Flexible diaminodihydrotriazine inhibitors of Plasmodium falciparum dihydrofolate reductase: Binding strengths, modes of binding and their antimalarial activities. Eur.J.Med.Chem. (2020)
- Release Date
- 2020-12-09
- Peptides
- Bifunctional dihydrofolate reductase-thymidylate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B