SMTL ID : 3jtu.1

Crystal structure of macrophage migration inhibitory factor (mif) with hydroxyquinoline inhibitor 708 at 1.86a resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

homo-trimer

Ligands

3 x ZIN: 7-(pyridin-2-ylmethyl)quinolin-8-ol(Covalent)

ZIN.1: 12 residues within 4Å: Chain A: P.1, M.2, K.32, Y.36, H.62, S.63, I.64, M.101, V.106, F.113 Chain C: Y.95, N.97 13 PLIP interactions: 12 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:P.1, A:Y.36, A:Y.36, A:H.62, A:I.64, A:V.106, A:V.106, A:F.113, A:F.113 Hydrogen bonds: A:K.32, A:S.63, A:I.64 pi-Stacking: C:Y.95 ZIN.4: 11 residues within 4Å: Chain A: Y.95, N.97 Chain B: P.1, M.2, K.32, Y.36, H.62, S.63, I.64, V.106, F.113 12 PLIP interactions: 1 interactions with chain A, 11 interactions with chain B pi-Stacking: A:Y.95 Hydrophobic interactions: B:P.1, B:Y.36, B:Y.36, B:H.62, B:I.64, B:V.106, B:V.106, B:F.113, B:F.113 Hydrogen bonds: B:S.63, B:I.64 ZIN.5: 11 residues within 4Å: Chain B: Y.95, N.97 Chain C: P.1, M.2, K.32, Y.36, H.62, S.63, I.64, V.106, F.113 13 PLIP interactions: 12 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:P.1, C:Y.36, C:H.62, C:I.64, C:V.106, C:V.106, C:F.113, C:F.113 Hydrogen bonds: C:K.32, C:S.63, C:I.64 pi-Stacking: C:Y.36, B:Y.95

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: H.118 Chain C: A.70, R.73 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:H.117 Salt bridges: A:H.118, C:R.73 SO4.3: 3 residues within 4Å: Chain A: E.116, H.117, H.118 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.118 Salt bridges: A:H.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McLean, L.R. et al., Discovery of covalent inhibitors for MIF tautomerase via cocrystal structures with phantom hits from virtual screening. Bioorg.Med.Chem.Lett. (2009)

Release Date

2009-11-10

Peptides

Macrophage migration inhibitory factor: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Macrophage migration inhibitory factor

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