SMTL ID : 3jwd.1 (1 other biounit)

Structure of HIV-1 gp120 with gp41-Interactive Region: Layered Architecture and Basis of Conformational Mobility

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.61 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

10 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: V.57, N.58 No protein-ligand interaction detected (PLIP) NAG.2: 4 residues within 4Å: Chain A: F.130, N.131, T.133, P.135 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.131 NAG.3: 2 residues within 4Å: Chain A: N.126, N.138 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.138 NAG.4: 9 residues within 4Å: Chain A: E.108, P.109, V.151, L.158, N.159, N.245, S.314, S.315 Ligands: NAG.10 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.151, A:L.158 Hydrogen bonds: A:N.159, A:S.315, A:S.315 NAG.5: 3 residues within 4Å: Chain A: N.173, T.175, D.176 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.173, A:D.176 Water bridges: A:N.173 NAG.6: 6 residues within 4Å: Chain A: E.165, E.166, V.167, N.186, Q.212, K.216 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Q.212 Hydrogen bonds: A:V.167, A:N.186 NAG.7: 5 residues within 4Å: Chain A: N.254, T.256, Q.257, P.285 Ligands: NAG.8 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Q.257, A:P.285 Hydrogen bonds: A:N.254, A:T.256 NAG.8: 3 residues within 4Å: Chain A: Q.257, N.260 Ligands: NAG.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.260 NAG.9: 4 residues within 4Å: Chain A: T.226, N.265, T.267, S.333 No protein-ligand interaction detected (PLIP) NAG.10: 4 residues within 4Å: Chain A: N.159, S.314, N.316 Ligands: NAG.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.314

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pancera, M. et al., Structure of HIV-1 gp120 with gp41-interactive region reveals layered envelope architecture and basis of conformational mobility. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2009-12-29

Peptides

HIV-1 GP120 ENVELOPE GLYCOPROTEIN: A
T-cell surface glycoprotein CD4: B
FAB 48D LIGHT CHAIN: C
FAB 48D HEAVY CHAIN: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
L

D
H

HIV-1 GP120 ENVELOPE GLYCOPROTEIN

T-cell surface glycoprotein CD4

FAB 48D LIGHT CHAIN

FAB 48D HEAVY CHAIN

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