SMTL ID : 3jzi.1

Crystal structure of biotin carboxylase from E. Coli in complex with benzimidazole series

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

homo-dimer

Ligands

2 x JZL: 7-amino-2-[(2-chlorobenzyl)amino]-1-{[(1S,2S)-2-hydroxycycloheptyl]methyl}-1H-benzimidazole-5-carboxamide(Non-covalent)

JZL.1: 20 residues within 4Å: Chain A: K.137, V.152, K.180, A.181, G.184, G.185, G.186, R.188, M.190, Y.220, E.222, K.223, Y.224, L.225, H.230, Q.254, H.257, L.299, I.308, E.309 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:K.137, A:K.180, A:H.257, A:L.299, A:I.308, A:I.308 Hydrogen bonds: A:K.180, A:G.186, A:G.186, A:E.222, A:E.222, A:L.225, A:H.257, A:E.309 Halogen bonds: A:I.308 JZL.2: 21 residues within 4Å: Chain B: K.137, I.178, K.180, A.181, G.184, G.185, G.186, R.188, G.189, M.190, Y.220, E.222, K.223, Y.224, L.225, H.230, Q.254, H.257, L.299, I.308, E.309 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:K.137, B:K.180, B:Q.254, B:L.299, B:L.299, B:I.308 Hydrogen bonds: B:K.180, B:G.186, B:G.186, B:E.222, B:E.222, B:L.225 pi-Cation interactions: B:K.180 Halogen bonds: B:I.308

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, C.C. et al., Discovery and optimization of antibacterial AccC inhibitors. Bioorg.Med.Chem.Lett. (2009)

Release Date

2009-11-03

Peptides

Biotin carboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Biotin carboxylase

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