SMTL ID : 3k2e.1 (1 other biounit)

Crystal structure of enoyl-(acyl-carrier-protein) reductase from Anaplasma phagocytophilum at 1.9A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 6 residues within 4Å: Chain A: V.89, A.92, H.141, Y.145, S.146, Y.149 2 PLIP interactions: 2 interactions with chain A Water bridges: A:S.90, A:A.92 EDO.2: 5 residues within 4Å: Chain A: A.115, V.116, A.117, L.167, K.186 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.116, A:K.186 Water bridges: A:V.116 EDO.5: 9 residues within 4Å: Chain A: L.133 Chain B: V.89, S.90, D.91, A.92, H.141, Y.145, S.146, Y.149 2 PLIP interactions: 2 interactions with chain B Water bridges: B:S.90, B:A.92 EDO.6: 3 residues within 4Å: Chain B: V.116, A.117, K.186 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.116, B:K.186 Water bridges: B:V.116 EDO.7: 6 residues within 4Å: Chain B: M.279, K.280, S.281 Chain C: V.175, P.177 Chain D: V.198 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:M.279 Water bridges: B:V.282 EDO.10: 6 residues within 4Å: Chain C: V.89, A.92, H.141, Y.145, S.146, Y.149 2 PLIP interactions: 2 interactions with chain C Water bridges: C:S.90, C:A.92 EDO.11: 5 residues within 4Å: Chain C: A.115, V.116, A.117, L.167, K.186 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:V.116, C:K.186 Water bridges: C:V.116 EDO.14: 9 residues within 4Å: Chain C: L.133 Chain D: V.89, S.90, D.91, A.92, H.141, Y.145, S.146, Y.149 2 PLIP interactions: 2 interactions with chain D Water bridges: D:S.90, D:A.92 EDO.15: 3 residues within 4Å: Chain D: V.116, A.117, K.186 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:V.116, D:K.186 Water bridges: D:V.116 EDO.16: 6 residues within 4Å: Chain A: V.175, P.177 Chain B: V.198 Chain D: M.279, K.280, S.281 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:M.279 Water bridges: D:V.282

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: G.126, R.127, Y.128, V.175, N.180 Chain B: Y.195, V.198, D.199 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.128, A:N.180, B:D.199 Water bridges: A:N.180 GOL.4: 9 residues within 4Å: Chain A: I.36, G.37, V.38, T.62, Y.63, L.64, C.87, D.88, V.89 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.37, A:V.38, A:T.62, A:T.62, A:V.89 Water bridges: A:V.38, A:T.62 GOL.8: 10 residues within 4Å: Chain A: Y.195, V.198, D.199 Chain B: G.126, R.127, Y.128, V.175, P.177, H.178, N.180 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Y.128, B:H.178, B:H.178, B:N.180, A:D.199 Water bridges: A:D.199 GOL.9: 9 residues within 4Å: Chain B: I.36, G.37, V.38, T.62, Y.63, L.64, C.87, D.88, V.89 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:G.37, B:V.38, B:T.62, B:V.89 Water bridges: B:V.38, B:T.62 GOL.12: 8 residues within 4Å: Chain C: G.126, R.127, Y.128, V.175, N.180 Chain D: Y.195, V.198, D.199 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:Y.128, C:N.180, D:D.199 Water bridges: C:N.180 GOL.13: 9 residues within 4Å: Chain C: I.36, G.37, V.38, T.62, Y.63, L.64, C.87, D.88, V.89 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:G.37, C:V.38, C:T.62, C:T.62, C:V.89 Water bridges: C:V.38, C:T.62 GOL.17: 10 residues within 4Å: Chain C: Y.195, V.198, D.199 Chain D: G.126, R.127, Y.128, V.175, P.177, H.178, N.180 6 PLIP interactions: 2 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:D.199, D:Y.128, D:H.178, D:H.178, D:N.180 Water bridges: C:D.199 GOL.18: 9 residues within 4Å: Chain D: I.36, G.37, V.38, T.62, Y.63, L.64, C.87, D.88, V.89 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:G.37, D:V.38, D:T.62, D:V.89 Water bridges: D:V.38, D:T.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., Crystal structure of enoyl-(acyl-carrier-protein) reductase from Anaplasma phagocytophilum at 1.9A resolution. To be Published

Release Date

2009-10-13

Peptides

Enoyl-(Acyl-carrier-protein) reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Enoyl-(Acyl-carrier-protein) reductase

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