SMTL ID : 3k4k.1

Pyranose 2-oxidase F454N mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.1: 33 residues within 4Å: Chain A: V.52, G.53, G.55, P.56, I.57, D.76, I.77, G.78, I.107, T.158, R.159, V.160, G.163, M.164, S.165, H.167, W.168, T.169, C.170, A.171, V.281, C.283, T.319, A.320, G.321, H.324, L.547, H.548, G.582, C.583, N.593, P.594, T.595 25 PLIP interactions: 25 interactions with chain A Hydrophobic interactions: A:I.107, A:W.168, A:L.547 Hydrogen bonds: A:G.55, A:I.57, A:I.77, A:G.78, A:T.158, A:V.160, A:G.163, A:M.164, A:T.169, A:T.169, A:A.171, A:A.171, A:C.283, A:C.283, A:N.593, A:T.595 Water bridges: A:G.58, A:G.321, A:L.547, A:L.596 pi-Stacking: A:W.168, A:H.548 FAD.2: 33 residues within 4Å: Chain B: V.52, G.53, G.55, P.56, I.57, D.76, I.77, G.78, I.107, T.158, R.159, V.160, G.163, M.164, S.165, H.167, W.168, T.169, C.170, A.171, V.281, C.283, T.319, A.320, G.321, H.324, L.547, H.548, G.582, C.583, N.593, P.594, T.595 25 PLIP interactions: 25 interactions with chain B Hydrophobic interactions: B:I.107, B:W.168, B:L.547 Hydrogen bonds: B:G.55, B:I.57, B:I.77, B:G.78, B:T.158, B:V.160, B:G.163, B:M.164, B:T.169, B:T.169, B:A.171, B:A.171, B:C.283, B:C.283, B:N.593, B:T.595 Water bridges: B:G.58, B:G.321, B:L.547, B:L.596 pi-Stacking: B:W.168, B:H.548 FAD.3: 33 residues within 4Å: Chain C: V.52, G.53, G.55, P.56, I.57, D.76, I.77, G.78, I.107, T.158, R.159, V.160, G.163, M.164, S.165, H.167, W.168, T.169, C.170, A.171, V.281, C.283, T.319, A.320, G.321, H.324, L.547, H.548, G.582, C.583, N.593, P.594, T.595 25 PLIP interactions: 25 interactions with chain C Hydrophobic interactions: C:I.107, C:W.168, C:L.547 Hydrogen bonds: C:G.55, C:I.57, C:I.77, C:G.78, C:T.158, C:V.160, C:G.163, C:M.164, C:T.169, C:A.171, C:A.171, C:C.283, C:C.283, C:N.593, C:T.595, C:T.595 Water bridges: C:G.58, C:G.321, C:L.547, C:L.596 pi-Stacking: C:W.168, C:H.548 FAD.4: 33 residues within 4Å: Chain D: V.52, G.53, G.55, P.56, I.57, D.76, I.77, G.78, I.107, T.158, R.159, V.160, G.163, M.164, S.165, H.167, W.168, T.169, C.170, A.171, V.281, C.283, T.319, A.320, G.321, H.324, L.547, H.548, G.582, C.583, N.593, P.594, T.595 25 PLIP interactions: 25 interactions with chain D Hydrophobic interactions: D:I.107, D:W.168, D:L.547 Hydrogen bonds: D:G.55, D:I.57, D:I.77, D:G.78, D:T.158, D:V.160, D:G.163, D:M.164, D:T.169, D:A.171, D:A.171, D:C.283, D:C.283, D:N.593, D:T.595, D:T.595 Water bridges: D:G.58, D:G.321, D:L.547, D:L.596 pi-Stacking: D:W.168, D:H.548

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Spadiut, O. et al., Importance of the gating segment in the substrate-recognition loop of pyranose 2-oxidase. Febs J. (2010)

Release Date

2010-05-12

Peptides

Pyranose 2-oxidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Pyranose 2-oxidase

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