SMTL ID : 3k57.1

Crystal structure of E.coli Pol II-normal DNA-dATP ternary complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

1 x DTP: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE(Non-covalent)

DTP.1: 19 residues within 4Å: Chain A: D.422, Y.423, K.424, S.425, L.426, Y.427, P.428, R.480, K.496, N.500, Y.503, T.549, D.550, E.596 Chain B: T.4, G.5 Chain C: C.13 Ligands: MG.2, MG.3 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:Y.427 Hydrogen bonds: A:S.425, A:L.426, A:Y.427, A:N.500, A:E.596, A:E.596 Water bridges: A:R.480, A:R.480, A:R.480, A:R.480, A:K.496, A:K.496, A:K.496, A:E.598, A:E.598 Salt bridges: A:R.480, A:K.496, A:K.496, A:K.496

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: D.422, Y.423, D.550 Ligands: DTP.1, MG.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.422, A:Y.423, A:D.550 MG.3: 5 residues within 4Å: Chain A: D.422, D.550 Chain C: C.13 Ligands: DTP.1, MG.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.422, A:D.550, H2O.2, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., Structural insight into translesion synthesis by DNA Pol II. Cell(Cambridge,Mass.) (2009)

Release Date

2010-02-09

Peptides

DNA polymerase II: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase II

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