SMTL ID : 3k9g.1

CRYSTAL STRUCTURE OF A PLASMID PARTITION PROTEIN FROM BORRELIA BURGDORFERI AT 2.25A RESOLUTION, iodide soak

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: H.120, S.123 Chain B: L.156 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:L.156, A:S.123 Water bridges: A:S.123 NA.14: 3 residues within 4Å: Chain A: L.156 Chain B: H.120, S.123 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:L.156, B:H.120 Water bridges: B:S.123

24 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 2 residues within 4Å: Chain A: A.176, F.217 Ligand excluded by PLIP IOD.3: 3 residues within 4Å: Chain A: P.199, F.201, R.225 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: L.184, N.188, K.223 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: I.35, I.172 Ligand excluded by PLIP IOD.6: 3 residues within 4Å: Chain A: H.129, K.130, D.131 Ligand excluded by PLIP IOD.7: 2 residues within 4Å: Chain A: N.55, N.109 Ligand excluded by PLIP IOD.8: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.9: 2 residues within 4Å: Chain A: S.71 Chain B: W.179 Ligand excluded by PLIP IOD.10: 2 residues within 4Å: Chain A: F.217, F.226 Ligand excluded by PLIP IOD.11: 1 residues within 4Å: Chain A: T.50 Ligand excluded by PLIP IOD.12: 1 residues within 4Å: Chain A: V.181 Ligand excluded by PLIP IOD.13: 2 residues within 4Å: Chain A: N.56, L.264 Ligand excluded by PLIP IOD.15: 2 residues within 4Å: Chain B: A.176, F.217 Ligand excluded by PLIP IOD.16: 3 residues within 4Å: Chain B: P.199, F.201, R.225 Ligand excluded by PLIP IOD.17: 3 residues within 4Å: Chain B: L.184, N.188, K.223 Ligand excluded by PLIP IOD.18: 2 residues within 4Å: Chain B: I.35, I.172 Ligand excluded by PLIP IOD.19: 3 residues within 4Å: Chain B: H.129, K.130, D.131 Ligand excluded by PLIP IOD.20: 2 residues within 4Å: Chain B: N.55, N.109 Ligand excluded by PLIP IOD.21: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.22: 2 residues within 4Å: Chain A: W.179 Chain B: S.71 Ligand excluded by PLIP IOD.23: 2 residues within 4Å: Chain B: F.217, F.226 Ligand excluded by PLIP IOD.24: 1 residues within 4Å: Chain B: T.50 Ligand excluded by PLIP IOD.25: 1 residues within 4Å: Chain B: V.181 Ligand excluded by PLIP IOD.26: 2 residues within 4Å: Chain B: N.56, L.264 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abendroth, J. et al., SAD phasing using iodide ions in a high-throughput structural genomics environment. J Struct Funct Genomics (2011)

Release Date

2009-11-03

Peptides

PF-32 protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PF-32 protein

Related Entries With Identical Sequence