SMTL ID : 3kb1.1

Crystal Structure of the Nucleotide-binding protein AF_226 in complex with ADP from Archaeoglobus fulgidus, Northeast Structural Genomics Consortium Target GR157

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: K.27, G.28, G.29, V.30, G.31, K.32, S.33, T.34, S.61, N.190, M.191, P.227, I.228, D.229, L.233, S.236 Chain B: Q.163 16 PLIP interactions: 15 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.27, A:G.29, A:V.30, A:G.31, A:K.32, A:S.33, A:T.34, A:T.34, A:T.34, A:S.61, A:N.190, A:P.227, A:D.229, A:S.236, B:Q.163 Salt bridges: A:K.32 ADP.3: 17 residues within 4Å: Chain A: Q.163 Chain B: K.27, G.28, G.29, V.30, G.31, K.32, S.33, T.34, S.61, N.190, M.191, P.227, I.228, D.229, L.233, S.236 15 PLIP interactions: 14 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.29, B:V.30, B:G.31, B:K.32, B:S.33, B:T.34, B:T.34, B:T.34, B:S.61, B:N.190, B:P.227, B:D.229, B:S.236, A:Q.163 Salt bridges: B:K.32

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.196, C.199 Chain B: C.196, C.199 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:C.196, A:C.199, B:C.196, B:C.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Forouhar, F. et al., Northeast Structural Genomics Consortium Target GR157. To be Published

Release Date

2009-10-27

Peptides

Nucleotide-binding protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nucleotide-binding protein

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