SMTL ID : 6oby.1

The nucleotide-binding protein AF_226 in complex with ADP from Archaeoglobus fulgidus with Co found by PIXE. Based on 3KB1.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.87 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 18 residues within 4Å: Chain A: G.28, G.29, V.30, G.31, K.32, S.33, T.34, S.61, N.190, M.191, I.226, P.227, I.228, D.229, L.232, L.233, S.236 Chain B: Q.163 16 PLIP interactions: 14 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:G.29, A:V.30, A:G.31, A:K.32, A:S.33, A:S.33, A:T.34, A:T.34, A:S.61, A:S.61, A:N.190, A:P.227, A:D.229, A:S.236, B:Q.163, B:Q.163 ADP.3: 18 residues within 4Å: Chain A: Q.163 Chain B: G.28, G.29, V.30, G.31, K.32, S.33, T.34, S.61, N.190, M.191, I.226, P.227, I.228, D.229, L.232, L.233, S.236 15 PLIP interactions: 14 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.27, B:G.29, B:V.30, B:G.31, B:K.32, B:S.33, B:T.34, B:T.34, B:S.61, B:N.190, B:P.227, B:D.229, B:S.236, A:Q.163 Salt bridges: B:K.32

1 x CO: COBALT (II) ION(Non-covalent)

CO.2: 6 residues within 4Å: Chain A: C.196, N.198, C.199 Chain B: C.196, N.198, C.199 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:C.196, A:C.199, B:C.196, B:C.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grime, G.W. et al., High-Throughput PIXE as an Essential Quantitative Assay for Accurate Metalloprotein Structural Analysis: Development and Application. J.Am.Chem.Soc. (2020)

Release Date

2019-12-25

Peptides

Iron-sulfur cluster carrier protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Iron-sulfur cluster carrier protein

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