SMTL ID : 3kbh.2 (1 other biounit)

Crystal structure of NL63 respiratory coronavirus receptor-binding domain complexed with its human receptor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.31 Å

Oligo State

hetero-2-2-mer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: K.8, N.72, L.73 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.73 Hydrogen bonds: A:K.8 NAG.2: 2 residues within 4Å: Chain A: S.402, N.528 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.402, A:S.402 NAG.3: 4 residues within 4Å: Chain B: D.4, N.6, N.30, I.47 No protein-ligand interaction detected (PLIP) NAG.4: 3 residues within 4Å: Chain B: N.30, G.31, N.32 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.30 NAG.5: 3 residues within 4Å: Chain C: K.8, N.72, L.73 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:L.73 Hydrogen bonds: C:K.8 NAG.6: 2 residues within 4Å: Chain C: S.402, N.528 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.402, C:S.402 NAG.7: 4 residues within 4Å: Chain D: D.4, N.6, N.30, I.47 No protein-ligand interaction detected (PLIP) NAG.8: 3 residues within 4Å: Chain D: N.30, G.31, N.32 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, K. et al., Crystal structure of NL63 respiratory coronavirus receptor-binding domain complexed with its human receptor. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-12-15

Peptides

Angiotensin-converting enzyme 2: AC
Spike glycoprotein: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
D

B
F

D
H

Angiotensin-converting enzyme 2

Spike glycoprotein

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