SMTL ID : 7dx4.1

The structure of FC08 Fab-hA.CE2-RBD complex

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: S.402, D.525, S.527, N.528 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.402, A:S.402, A:S.402, A:N.528 NAG.2: 2 residues within 4Å: Chain A: N.72, T.74 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.72, A:T.74 NAG.3: 2 residues within 4Å: Chain A: N.304, M.305 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.304 NAG.4: 4 residues within 4Å: Chain A: N.35, T.37, E.39, Q.322 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.39, A:E.39, A:Q.322 NAG.5: 3 residues within 4Å: Chain B: G.7, N.11, V.35 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:V.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, L. et al., A proof of concept for neutralizing antibody-guided vaccine design against SARS-CoV-2. Natl Sci Rev (2021)

Release Date

2021-04-21

Peptides

Angiotensin-converting enzyme 2: A
Spike protein S1: B
Heavy chain of FC08 Fab: C
Light chain of FC08 Fab: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

C
H

D
L

Angiotensin-converting enzyme 2

Spike protein S1

Heavy chain of FC08 Fab

Light chain of FC08 Fab

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