SMTL ID : 3ke5.1

Crystal structure of a PduO-Type ATP:Cob(I)alamin adenosyltransferase from Bacillus cereus in a complex with ATP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

3 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 18 residues within 4Å: Chain A: Y.24, T.25, K.26, T.27, G.28, T.32, T.33, S.34, K.42, V.47, Y.50, G.51 Chain C: R.149, E.152, R.153, N.173, D.177 Ligands: MG.6 21 PLIP interactions: 10 interactions with chain C, 11 interactions with chain A Hydrogen bonds: C:R.149, C:R.149, C:R.149, C:E.152, C:R.153, C:N.173, C:D.177, A:T.25, A:K.26, A:T.27, A:G.28, A:T.32, A:T.33, A:S.34 Salt bridges: C:R.149, A:K.42, A:K.42 pi-Cation interactions: C:R.149, C:R.149 Water bridges: A:K.42, A:K.42 ATP.3: 19 residues within 4Å: Chain A: R.149, E.152, R.153, N.173, D.177 Chain B: Y.24, T.25, K.26, T.27, G.28, D.29, T.32, T.33, S.34, K.42, V.47, Y.50, G.51 Ligands: MG.2 24 PLIP interactions: 10 interactions with chain B, 14 interactions with chain A Hydrogen bonds: B:T.25, B:K.26, B:T.27, B:T.27, B:G.28, B:T.32, B:T.33, B:S.34, A:R.149, A:R.149, A:R.153, A:N.173, A:D.177 Salt bridges: B:K.42, B:K.42, A:R.149 Water bridges: A:R.149, A:R.149, A:R.149, A:R.149, A:N.173, A:D.177 pi-Cation interactions: A:R.149, A:R.149 ATP.5: 19 residues within 4Å: Chain B: R.149, E.152, R.153, N.173, D.177 Chain C: Y.24, T.25, K.26, T.27, G.28, T.32, T.33, S.34, V.35, K.42, V.47, Y.50, G.51 Ligands: MG.4 28 PLIP interactions: 13 interactions with chain B, 15 interactions with chain C Hydrogen bonds: B:R.149, B:R.149, B:E.152, B:R.153, B:N.173, B:D.177, C:T.25, C:K.26, C:T.27, C:G.28, C:T.32, C:T.33, C:S.34 Water bridges: B:R.149, B:R.149, B:N.173, B:R.174, C:S.34, C:S.34, C:S.34, C:S.34, C:K.42, C:K.42 Salt bridges: B:R.149, C:K.42, C:K.42 pi-Cation interactions: B:R.149, B:R.149

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: N.173 Chain B: K.42 Ligands: ATP.3 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain B: N.173 Chain C: K.42 Ligands: ATP.5 No protein-ligand interaction detected (PLIP) MG.6: 3 residues within 4Å: Chain A: K.42 Chain C: N.173 Ligands: ATP.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, A.K. et al., Crystal structure of a PduO-Type ATP:Cob(I)alamin adenosyltransferase from Bacillus cereus in a complex with ATP. To be Published

Release Date

2010-10-20

Peptides

Hypothetical Cytosolic Protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Hypothetical Cytosolic Protein

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